Gene detail

Detailed information of ANN12483-RA in Leptoseris scabra

Genomic Location: Scaffold_8__1_contigs__length_51692913:49866852...49876515
NR annotation: CAH3038809.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN12483-RA

ATGGCGTGTTTCAGAACTTGTGCTTTGGCAAATGCATCAATCTGTGCAGCTGCACCAATCAAAAAGCCTTCTCAGTCTCACAAGATGTCTGGAACAGTTCAGTCACCGGTTTCCAAATATGGCCGCAGTAGCGAGTTTGGCGTCGTGTTGGATTTCATTCAGCGCATGATCAGCAACGATACACTTAGGCAAAATTTCGACATTCCGCATCTAGTCATGGTTGGTCGACAAAACATGGCAAAAACAACGCTTATCAACCGGCTTATCGGTCGTTATCTTCTTCCTATGCGACGCAATGAAACAGCCAATACCCTGCAGGCGCGCACCACATACCCCATAATACTCAATCTTCGTAATGGCGAGAAACCAATCGTGGAAGTAAAATGCGACAAGATCCCGGATATTGGGGGGACGGTGGAAAACCCCTCGGACAGCGTGGTAGAGGATTTTCTAAAGCAAGTTGCTGGTCATCTCCCCAAGGAACCGGGAACTCCGATTTCCAAGACCCCGGTTAACGTGACTCTGCAAGGCCCCGAACTTACGACCCTCACTTTGGTGGACCTTCCCGGCGCCCACTTCGCCAACGATGACGTCCGAATGAACCGCGTGACCCAAGAGCTCGTGCTGGAGTACATCAAGAAGAACACCAAGAGCATCATCGTGATAGTGTCCGAAGTAGGGGACCCTACTGGGGACAGTGCCATCAACCTTGTCATGACACAGGCCACGGATTTTAAGAGCCGGACCATCTGTGTCCTGACCAAGCCGGACAGGCTTAGAGACTCCGATGATATGGGAAGGAAAGTCGCCTTGAATATGTCAAGTTTTACTCTGGAGGAGAATCGCTTCATTTTGTTAAGAGGTAAAGATGGCACGGACTTGAACGAGAAGGACTGGGACGCACCAACGACCCGTGAAAAGGAAAAGGAATGGTTCGCCAGGCATCCGCAGTACAAAAGCATTCAGCATCTGTGTGGAATTGACCGGCTTATGGAGTCCATGATCTCTTTACTGGCAAGCAAAATGATCGTAGAGATTCCTATATTAGTGCGAGAAATGAAAGACCGAAAGAAAAAGGTAGAAGAGGAGCTCAAAATATTGGCTCTTAGCGAGGTACCAGAGTCGAGCGAAGGAAGAGGAGCCCTTGTGATGAAAATCAAACACAATCTCATCGATGAGCTTAAGAAGCTGTTGTTTAATAACACATCCACATCCATTGGAGGAGGCGAGGAAGTGAGACGATTGTTCAACAAATTCCATGACGATGTTTTTAAGGTGGACCCTCTGGCTTTGCGAAGTGACGATGAGATTCGAACACAGCAGAAAAAACTTGAGGGCGTGGCCGCCCCTCTGGGAGACAGCAGTGAAAATAGTCAGCTGCTTCAGAAACTACTCTACGAGAAATACCAAGGGAGACGTATGATTCCAGCAGGTAGCCCCGCTTTCCAAGTCGGCACCATAGGAAACGCAGGATCAATCCCCCAAAGATTTATATCAGTTGAATTCCAAGCCCCGGTCGATCAACTGATGCCGATATCTAAAGGTCTTGTGAACAACGTGGAGGAAACTCTGCGAAGGATTGTTCAGGACGCCATCGACCTTAGCCTGTCCAAGTTCCCTACCCTCAAAAAAGCAGTGGAGGTCAAAGTGGTGAGCAAAATTTTCGAAACCAAACGTGATCAGACGATCCTGTTTATCCAGCAATTTCTTGAGATGCAGAAGAAGAGTACTGACGTGGTGTTTGCCCCGGTACCGTTTCCTAACGAAATAAGCACGTGGGATGCCGTAAGAACGCTCCAGAACAACACCCACCCTTGCATGATGTCTCAAACGATGAGTCATTTGAAGTACCTGGCCCAAAAGCTTTATCCTGAAAAAATGATTGAGGAGATCGAGAGCAAAAATAGGCGAGGAAACTACAAGGAGATCGAAGATATGAAGAAAATCAAACTGAATGTGGTGCGCTGCTTCAACGTGCTGAAGTTAAACGTTTGTGACACAGTTCCTCGCTGCATCCTGCATTTCTTTATCACCCAACTGGTGGATGATCTTGGCCGCGCCTTGGAGGGGGAAGACTTGGTTGAGTTCCTTCAAGAAAAGCAGGAGATCCGGGACAAGCGAAACCTGTATCGGGCCCAGTTCGTCGCTCTGGAGGAGGCGCTGCCTCGCACTGATAACGTAATGGAGAAACTACTGCGCATGCAGCAGGGACCAAAGAAGGGAGAGAAGCTACAGTTTTGA

Transcript

ANN12483-RA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002531 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02212 all species →	GED	Dynamin GTPase effector domain	Family	Interproscan
PF01031 all species →	Dynamin_M	Dynamin central region	Family	Interproscan
PF00350 all species →	Dynamin_N	Dynamin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR022812 all species →	Family	Dynamin	Interproscan
IPR003130 all species →	Domain	Dynamin GTPase effector	Interproscan
IPR000375 all species →	Domain	Dynamin stalk domain	Interproscan
IPR001401 all species →	Domain	Dynamin, GTPase domain	Interproscan
IPR045063 all species →	Domain	Dynamin, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11566 all species →	DYNAMIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005874 all species →	Cellular Component	microtubule	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17065	DNM1L; dynamin 1-like protein	EC:3.6.5.5	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.