Gene detail

Detailed information of ANN12525-RA in Leptoseris scabra

Genomic Location: Scaffold_8__1_contigs__length_51692913:50565028...50577697
NR annotation: CAH3107441.1, unnamed protein product [Porites lobata]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN12525-RA

ATGATGGATGTGTTGTCTTCCGTCTTAAACAAGTTCAAGGATGTTTTCCTTCCCTCACATGAAGACACAGGATTTGTCAAAAAGCAGATTTCAAAAGGAGCTAGCAACAACCAAGATGTTCTCATTCTTCGTTCTTCAGAACTGAAAATTATAAAACCTTGGAGTGAAAGCCAGTACGAATTCATTGTCCCTGAAAGTCCTTGCCTCGATGATGCAAGTCTCAACCCAATTAACTGCCTGTATGCCATGAGTGCTTTTGCTTTTGTGAAAGGGAACACAGAATGTTTGGAAGAAATATACAATATTGCAGTTACTACTTTTCAACACGCTCCCAATGCTGGCTTTCTGATGAATATCCTTGGAGTGATGTTTAGTGAAAAGGCAGAGTATGTGAAGAGTTACGAGTGCTTTTGCAAAGCCAAGAGGTGTTTTGAACGTGAACACGACCATCTTAACAATGCCATTGTCACTTTGAACTTAGCAGCTGTTTGTAAGGTCCTGGGAGAGTATGAAGAGGCGTGGCACTTCTGTGATCATGCAGCTGACTTGTGCCATGACATTTCTATGAGAACAACACAAGATGTTTTGCTGCCAACAAAGGTTTTGAGAAGGCTTGCTGATTTATTGGAAGAGTTAGGAAACTATGAAAAGTTTTGCAAGATTTTGAGCATTGCTGTACAGTATGACATTAGTAGTGGTAGCAAAGCGTGTGAAGTTGACTTAACAAAAAGGTTGATGAAAATCCAGCTTAACGAGCAAAATGGTGAGAAATTTGAAGGAAAAGAACTCGAAGACTTTACCTCTTATTTGTTGGCATTGATAGAAAGACCAGATAAAGAGTTGCTGAGTGTTGATTTCTTGAGAACAGTTATGATTGCAGCAAGGATTAACCGCAAGGCTGGTCATCCTGATGAAGCATTCAAGTTACTGGAGAAGTTGGAAGGTGCATTCCTGTTGGTTCGAAACAGCAAGTACCCCCTTTATGGAGTGATGCTGTTTCAAATTGGTCACTTCAAATTTGGCTCTCAAAAGTTCAGTGAGGCTAAGAGTGCTCTGGAACAGGCAGAAAAGATCTTGGTCAGTTACTTTGGAAGAAGCCACCATGTAGTTGCATTTTGCAAGAAGCTATTGGGTGTCAGCTGTGCAGAATTAAAGGACAGCACCACGGATGCCTTTAAGCACCTGAATGAAGCGCTTACTGTGTTCAGGAACATAAATCATCAGCATTTAGAAGAAGCAGAAATTATGTTGAAGTTTGCTGATTTGTACATTAAAGATGGAAAGTTGCAGTGCGCCAGAGAAACCTTGTCAAAGGCTATGGATCTTTTAATAGAAACTTGTGGTGAAATCTCCCCTAAGACAGCAAGTGGATACATTCAATCTGCACAAATCTTACAAAAGGTTCACAAATTCCGAGGTGAAGCTGCTGGCAAAATAAAAAATGCCATTGATATTTTCTTAAACCTTGGATTAAGACAAGATCATCCTGATGTTGTGTTTTGCCAGTATTTGCTTGGGGCCCTGCAACTCTCCTTGGGCAAGAACAAAGAAGCTGAACAGTATTTTGTTGATGTGCAAAACCAGGAATCCTTGCCCAGTGAATCCAGCAGGAGAAAATCCCAGTTAAATTGTGTTGGTCCTGAAGTCAGCAACATGTTCATTGCAGGCAGTGTTGGTCATGCTTTTGGGAGCTGCCCTTATCATGCTGCCAAAATTGTTTCTCTTGTTAGTCTGGTAAACATGAAGAAAGGCAGTGACAGGCAGAAGTATCTTTATGCCTTGTTAAGCTGTGTGGAAGAGAGTGAAACGGATTTACAAGAACGATGGAATTTTGCAGGCCACAGTGTTTATTGTTTTTCATATACAGTATGCTATGACAAGATCGTGTACTGTGTTATTTCCTTGGACCCAAACCTCAAACCTTCACAGTGTATGGATAATGGCAATGATTCCAATTTGTTGATGTTGTCAAGTTCAGTGAAGTCATCTTGTGTACTGTTTTGGAGGAGTTCATGTAGTGTTCTGGAGATGAAAGAGTTGAAGCATTTAGAACTTACCTTACGTGACAGTGTTACCACACTCTTTTTGCAACCCAAGTTCAGGAAAGTCTATGATGAAGGGAAAGGCTTTTGCTTGGAACTAACCATGCCAGCAGAACTTGAAGATTTCTCCCTGTGCATGCAGATTGACCTTATCCCTCTTTTGACGGAGCTGAAGTTGACCAAGTCTGAGCCACATAAAAAGACTGAAGACTCTAACTGTTTGAAGTCTTGGTCATCTTTCCTGCCTGAACCTTCAGTACATGTCTCATACTTTTACTATAAATTTTGTAACAGGCGTGTAGCTGAATTCGCTTTTGATCATTTAATCTCAAGTTTACGTGAAGAATCAATTTTGAAAAAGCTGCAAGTTGTTGAGATCTCTAGTGCACCCACTTTAAAGAACGTTGCCTTTTCATCTTTACAAGAACTTAGGCCTTCCTCTTTATCTATTGTTGTGGACAGTGAATTACCTCTCCTTACTGTGAAATGCTGCACTTTGAAGGAATCACAGTCAAACTGCATTTGTTTCACAGTACAAAATTATCTTGAGAATGCAATGAAAACCTTGTGTGAAGTTGTCCAGGTGAACTTTGAAACCTCTGTAAAGATGTTGTGTGATGGTGTCAGAGTTGATAGCTACAAAGAATCTGCAAGCAGCAACAGTAGCTTGGATGTGAAACCTGAGATGTCATACCCCAGTACTGCATCAGAAACTGTGGATTCACCAAGCTGTGCAAGTACTGGAGACTCAGAATCAGGCTTGGAAAGCAACCAATCTGTAGAGGCCTTTTGCAATTGGGTTCCCGAAGAAGTGCCCCCTGTTTGTTGTGGCAGAGACAATCTCCATTCAGATGTGGATTTTTGCTTGTGCCTCCTCGATTGCTTGTTCAGCAACAGACCTGTCATACCAGAGGAAGACATATTAAATAGCAATGCAGTAGTTTCATCTCCTTATCCCAGTTTTGACAGCAGCATTCAACTTGATCGCAATCATCCGTTCCTTTCAGCTAGCTCTGCTTCCTCCCTGAACTCGCTGCCTGTAAGCCCTTGCACAAACTTTGAACATACTCCATTCATGCCAAACAAGTTGTCATCTGACAGCTTATCTTCTGACAGTAAACTGATGGAAAACAATTTGCTGCCACATACTGAACAGAAAGAAACAGAAGAAGTCACTTGTAGTAAACAGTTGTTGGAGAATTCATCTTCATGTGCTGCTGAGTGCAGTGGACTTCTTGAGGAGTTTACAGAGAAGCCCTTGCCACTCTCAGATGGATTGAACTTGTCAAGTTTTAAGGAGGGTTTAACTACAGGAGAAGGCAATCCTTATTCAGAAGGAACTCTCTTGAATGAGTGTGGTGGACCTACCCTGCTGAGTTTAGAGAATGAGCGTGCAGCCTTCCAGCATCAAATCCATGAATTTCAAGAACAAGTTAACCAGTTGGAGGAACAGTTGAAGAAGAGGGAGGCAGAGATACAGCAGCTTCAAGCTGAACTTGGAAGATATCTGTTTCTTGAGGACAAAGGAAGACGCAATCAGAAACTTCAGCTGTTGTCCAGGGAATCTGGCAGCGACCAGAGTATACCATGTGCTGGAAGTGCATCTTCTACTTTGACAAGCATGGATGGAAGGCTTCTTGGTGGAGCAAGTCCCATACAAGAGCCAAGTTCCACATTGCAAGCCAGACTTCTAGAAATCTCTGATTCCTTATCAGCAGATGAACTGAAACGGATGAAGTTTCTGGCCAGAGGCAAGGTGGATGGTTTCAGGCTTGCCAAAATCAGGGAGGGCTTTGAGCTATTTGAAGAACTGGAGACTGGAGGCAAATATCCATGTGCCTACATTGGTCAGCTGCTTGCAAGAGTTCAACGCTGGGATCTTCTGGAGAAACTTGGACTGCCTTTTCTGGATGATGCAAAGAGTGGATCAGAACATCTCCCAGAGCCACAAGCATCATTGCTATCCACAGATGAACTACCTGGAAGACGAGAGAAAGAGCCATTGACAAGCAATAGAACTTCACATGTTTCCACACGCAGCGAAGGAGATGATGGGGTGTCAAGACCAGAGCAAAGAGACTGTGAGCATAACTTGAATGCATCAGGTTCATCATCTGGGAGCTCTGATGTGACGGATCATGAGATGTCTGTAGGACATGTCAACTCGAGCAATGAACGTTTGTCCTTGCAAAATGCTTTTCATGCTGGAAAGCAGTGCCTTGATTCTTCTGATGCAAGTCCCATGTCAAATTCCAGTTGCAGCAGTACTGTAAATTCATCAGATTCGTTGGTCAGGTCTTCTCAGACTACTCTTTCCAACTGCACCTCACAAGGGTCTCCTTACAGTTCATCAAGCTTAACATCAAGCGATTCTCTTTCTGCAGCAGCAGCTAGTGAAATGTTTAGTGAAAGTGGTCTTGATCCAACAAATAGTGATGAAGAGATTGTTAGAAAGTCACATCATGCAGAAAATATGTCTGAAAATGGAGATCTTGATGAAGTTGGAGCATCTGCAGCTAAGAATGAGGAGAGGGAGGAACAGCCTGTAGATTTATGTGATGGAGTAGTAAGAGCAAACAAGACTGACACAAGGATATGTGCTCTTGGTGATGGCTTTGTTTTTGATCAAGCCAGTGGTACAGGCTCATTTGGACATGACCAATCAGCCATAGAAAGACATTCAGTTGGTGTATCCAGTGCTTCCTCTACAGACTGGGAACGTCTAGGTGCAAGACCAAAACGGGTCCAAATGCAATGCCCACCACCTGACCCAGCGCCACAAGAGATTGTCAGTCCTGCAGTGTCTGATGGTTTAACTGGTGATTTCTTAGCAAGACACTCACAAGACAAAGCCCTTCATGAAAGTCTTTACCGAGATGATGCAGATATTTCCTTGTTCAACGACACTCCTCTGCAGGGTGCTTCTTGTATTGATGGCATGATAAACTCATCAGAATCTAACAAAGCCAAGCCATATTTAGGGGCTTGCCAGTATACATCAGGGATTGATCCATATAGCAGGTTAGGAAATCCTTCTTTACATGGACCAAACAATGGGTGTGGAAGAATTGGTTTGCTAGGTGGTTTTTCCTTTAATGAATACTTGAATGGTAACAGTGGAGTTGCAACAGCACCTTTACCCAGCCATTTAGTAGGAAATAATGTTTCTTTTCATCGAAATTATTCGTCAAACAATGGTTTAAATATACCAAACAGTTATTCACTCCAAAGCAACTTTGTAAATAATGGTAGTACGTTCACAGGAGTGGAACACTTTAGCAGAGATTCTTATTTACCTTATGAGCAGCGTCTAGGACTTGCTTCGTCAAACTCTGGAAATCGACCTGTTTATTCAGGAATGAGTGGTTCAGGTTTCCCTAACTACCCTTGGATGGGTGCTGTGGGGTACCAACCGGGACCCCCTGTGTATAGTACACAACAATCTACTGTTTTGAGTGACAATGCTTCAACAGCTACACCTAAGCAGGACTTGAGGCAAACGACTCAGAATGCAAGCTTCACTTTAGGAAACCAGTCAAACAATGCTCAAACAACAAGTGCTTCTGCAGGAAATACTGGCTTTGTTGATGTAGGCAATTCTGGTTTGCCTGCTCCATCTTCAGTTTCCACTTGCATTAGTTCTAGTTCTGTGGTAGTGTCCACTACAACAAGTAGGCCTGCTCTAGCCTGCGCAGGTAGTAGTGCATTAACTGTACACAATAATGACAATGACAATAATGAAATTGATGACCAGGGAGCTGCTGGTGGTAATGCAGAGAGTAGCCTTGCACCTTATTGCAGTGATGCCAACAATGACAACTCTGGAGGTACTATTTTAAACAGAGACTTTGGTACTGACTCTGTGGAGTCCACAGACAACTCCTTGCTTGCCCTAGAACAACGAGTTTCGGAGGCCTGTGCCCTGGTTGAACGAGTGCTTAGGGAAAGGGAGGAACGTGAACAGTTTGGAAGAGAGATAGAAAGAAAAGAACAGCTGATAAGGGAACAGAGGGAAAGAGAAAGAAGGGAAAGAGAAGAAAGGGAACTGCAAGAAGCTGAGAGGTGGCCACAGCAGCAAGAGGCGATTACGGCACGCTCACAGTGGCTATGTGAACATTATCAACGACATTGTAGAGTGCGATTTCCTTGTTGCACACAATTCTATCCATGCCATCGCTGCCACAACAATTCTAGAGCATGTGATAATGAAGAGGCTAAGGCTTGCCATGCGACGCACCTCAAGTGTTCTCACTGTCAGCATGAACAGGAGATTGATGAAAACAGTGGGAAGTGTGCCAAGTGTGAGGGGAAGATGTCTGCCTATTTTTGCTCCATCTGCAAACATTTCACTAGTGTGGATAAGAATCCTTACCACTGTGAAAAATGTGGAATATGCAGAATCCACAAGGACAAATCATTCCATTGTGAAGTGTGTAATGTGTGTTTGGATAAGAGGCTGGAGGGGAATCACAAGTGCAGGCCCGATTCAGGTCACGATGAATGTTGTATTTGCTTGGAGGATGCATTCAGTGGGTGCCAGATATTGCCGTGCTCACACAAGGTTCATCGGGAATGTGCCATCGCTATGATCCAAAATGGCATTCGCACCTGCCCAATATGTCGGCACCCTCTTTACAGCCCACCAAGGGGATGA

Transcript

ANN12525-RA

Protein

ANN12525-RA

MMDVLSSVLNKFKDVFLPSHEDTGFVKKQISKGASNNQDVLILRSSELKIIKPWSESQYEFIVPESPCLDDASLNPINCLYAMSAFAFVKGNTECLEEIYNIAVTTFQHAPNAGFLMNILGVMFSEKAEYVKSYECFCKAKRCFEREHDHLNNAIVTLNLAAVCKVLGEYEEAWHFCDHAADLCHDISMRTTQDVLLPTKVLRRLADLLEELGNYEKFCKILSIAVQYDISSGSKACEVDLTKRLMKIQLNEQNGEKFEGKELEDFTSYLLALIERPDKELLSVDFLRTVMIAARINRKAGHPDEAFKLLEKLEGAFLLVRNSKYPLYGVMLFQIGHFKFGSQKFSEAKSALEQAEKILVSYFGRSHHVVAFCKKLLGVSCAELKDSTTDAFKHLNEALTVFRNINHQHLEEAEIMLKFADLYIKDGKLQCARETLSKAMDLLIETCGEISPKTASGYIQSAQILQKVHKFRGEAAGKIKNAIDIFLNLGLRQDHPDVVFCQYLLGALQLSLGKNKEAEQYFVDVQNQESLPSESSRRKSQLNCVGPEVSNMFIAGSVGHAFGSCPYHAAKIVSLVSLVNMKKGSDRQKYLYALLSCVEESETDLQERWNFAGHSVYCFSYTVCYDKIVYCVISLDPNLKPSQCMDNGNDSNLLMLSSSVKSSCVLFWRSSCSVLEMKELKHLELTLRDSVTTLFLQPKFRKVYDEGKGFCLELTMPAELEDFSLCMQIDLIPLLTELKLTKSEPHKKTEDSNCLKSWSSFLPEPSVHVSYFYYKFCNRRVAEFAFDHLISSLREESILKKLQVVEISSAPTLKNVAFSSLQELRPSSLSIVVDSELPLLTVKCCTLKESQSNCICFTVQNYLENAMKTLCEVVQVNFETSVKMLCDGVRVDSYKESASSNSSLDVKPEMSYPSTASETVDSPSCASTGDSESGLESNQSVEAFCNWVPEEVPPVCCGRDNLHSDVDFCLCLLDCLFSNRPVIPEEDILNSNAVVSSPYPSFDSSIQLDRNHPFLSASSASSLNSLPVSPCTNFEHTPFMPNKLSSDSLSSDSKLMENNLLPHTEQKETEEVTCSKQLLENSSSCAAECSGLLEEFTEKPLPLSDGLNLSSFKEGLTTGEGNPYSEGTLLNECGGPTLLSLENERAAFQHQIHEFQEQVNQLEEQLKKREAEIQQLQAELGRYLFLEDKGRRNQKLQLLSRESGSDQSIPCAGSASSTLTSMDGRLLGGASPIQEPSSTLQARLLEISDSLSADELKRMKFLARGKVDGFRLAKIREGFELFEELETGGKYPCAYIGQLLARVQRWDLLEKLGLPFLDDAKSGSEHLPEPQASLLSTDELPGRREKEPLTSNRTSHVSTRSEGDDGVSRPEQRDCEHNLNASGSSSGSSDVTDHEMSVGHVNSSNERLSLQNAFHAGKQCLDSSDASPMSNSSCSSTVNSSDSLVRSSQTTLSNCTSQGSPYSSSSLTSSDSLSAAAASEMFSESGLDPTNSDEEIVRKSHHAENMSENGDLDEVGASAAKNEEREEQPVDLCDGVVRANKTDTRICALGDGFVFDQASGTGSFGHDQSAIERHSVGVSSASSTDWERLGARPKRVQMQCPPPDPAPQEIVSPAVSDGLTGDFLARHSQDKALHESLYRDDADISLFNDTPLQGASCIDGMINSSESNKAKPYLGACQYTSGIDPYSRLGNPSLHGPNNGCGRIGLLGGFSFNEYLNGNSGVATAPLPSHLVGNNVSFHRNYSSNNGLNIPNSYSLQSNFVNNGSTFTGVEHFSRDSYLPYEQRLGLASSNSGNRPVYSGMSGSGFPNYPWMGAVGYQPGPPVYSTQQSTVLSDNASTATPKQDLRQTTQNASFTLGNQSNNAQTTSASAGNTGFVDVGNSGLPAPSSVSTCISSSSVVVSTTTSRPALACAGSSALTVHNNDNDNNEIDDQGAAGGNAESSLAPYCSDANNDNSGGTILNRDFGTDSVESTDNSLLALEQRVSEACALVERVLREREEREQFGREIERKEQLIREQRERERREREERELQEAERWPQQQEAITARSQWLCEHYQRHCRVRFPCCTQFYPCHRCHNNSRACDNEEAKACHATHLKCSHCQHEQEIDENSGKCAKCEGKMSAYFCSICKHFTSVDKNPYHCEKCGICRIHKDKSFHCEVCNVCLDKRLEGNHKCRPDSGHDECCICLEDAFSGCQILPCSHKVHRECAIAMIQNGIRTCPICRHPLYSPPRG

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96PM5	RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens OX=9606 GN=RCHY1 PE=1 SV=1
Q9CR50	RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus OX=10090 GN=Rchy1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000291 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05495 all species →	zf-CHY	CHY zinc finger	Domain	Interproscan
PF17874 all species →	TPR_MalT	MalT-like TPR region	Repeat	Interproscan
PF13639 all species →	zf-RING_2	Ring finger domain	Domain	Interproscan
PF01335 all species →	DED	Death effector domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR037275 all species →	Homologous_superfamily	Zinc finger, CTCHY-type superfamily	Interproscan
IPR008913 all species →	Domain	Zinc finger, CHY-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR001875 all species →	Domain	Death effector domain	Interproscan
IPR037274 all species →	Homologous_superfamily	Zinc finger, CHY-type superfamily	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017921 all species →	Domain	Zinc finger, CTCHY-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21319 all species →	RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN12525-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.