Gene detail

Detailed information of ANN12724-RA in Leptoseris scabra

Genomic Location: Scaffold_7__1_contigs__length_55811456:3477953...3498152
NR annotation: CAH3015124.1, unnamed protein product [Porites evermanni]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN12724-RA

ATGGATGGAAATTCTACGGGTCCTCGTAATAGTCCTTCAACCGAAGAAACTTTTGAACAGCTTTATCCATCTTTGCTTCAATGCTTTACTGTCATTCTCCTTGGCTACTGTGTTGGAAGACTAGGGTATGTCTCTCCCACTTCGAGCAAAGGTATTGGAGTATTTGTGAGTCTTGTTTCGTTACCAGCGTTGCTATTTAAATCAATGGTGGAACTTGACTATTCCCAAGTCAACTGGCGATTCTTAACCAGCATTCTCATCGCGAAAAGTACCGTATTTTTCTCTGTGGTGTTGTTTACATTGATACTTGTTCGTCCTACGAATTTTGGAAAAGCTGGAATATACGGAATTTTCTGTAGTCAATCAAACGACATGGCTCTTGGATACCCACTAGTGAAAGCAATGTACCAGCAGTCACACCCTGAATATGTGAACTACTTGTACCTGATGTTACCAATTTCCTTGGTTATTCTCAATCCTATTGGATTCATTCTCATGGAAATACATAAGCAGCGCAGTACCAATGTGGACTCAGTCAGCAAGCTGAAGATTGCTCTTACAGCAATCAAAGGAGTGGTGACTGATCCCATTGTCTTCATGACATTCATTGGACTTATTGGACATTTCATTTTCCATGGAAAATTACCGGCTGTTGTTGATCAGATCCTCAGTGGACTTAGCCAGGCATTTTTGGCGACAGCCTTGTTTTACTTGGGAGTCAACATGGTAGGAAACATGAAAACTAAAATGGGCTCGGGATTGATGGTTCCATTTTTGTTAATTTCTGCAAAATTAGTTGTTCTTCCTCTCATTGTGCGGGAAATGATTCAAGTGCTTCATGTTGGAAACAGCACCAGTGAAACCAATTGCTGGAGTATGTTTGGCTTCTTGTATGGAACCTTTCCTGCTTCACCATCTTCTGCCATATTTGCAGCTAAGTTTGGCATTGAAGAGCAATTGGTAACAAGTACCATGGTCATGTGTACATTCTTGTCAGCTCCAGTCATGTTCATCTCTGCGCAGATGTCACTCTTGAATTATAATACTCAAACAGCAATTGACTTTGAACGTGTTATAAAAGATGCAATGGTTGATATTAGTGGCACTTCTTTGCCTTTTGGAGTGTGGGTTATTGTTGTTCTGTACCTTGGGAGGCGTCATAAGATTTATCCACATAACTATACAATGTGTTTGATTTTTTGCCAGCTATCCATTTGTGTGTCAACACTTCTGTCAAAGATTCCTTGCCAGTCAGAGTACTGGTTCCTGTTTGTCTCCATTTTATTCTTGTTTGGTCAGTGGGGATCAAGATGCTGGACTGCCATGGTTGCATTCTCCTTGTGTCTTGTTAGATGTAAAGGTGATGAGACTGTAAGGAAGTTCAAAGTCTGGATATGGTTTTTTGGATTTGGACTGCCATTGCTCTTTTGTGGAATTGTTACTGCACTGCTACCTTCTTTTCAAGACAAGTCTCCTTTATTCATATACAATGTCATGACTGAGATGCCAGCCATGATAGCCTCAGCATCAGTACTGCTCCTTAGTGCTGTGATAATAGTAGTTTCCCTGGTGTATCTTCAACGCCATGACCTTTACTGTAAGTGTTCTCGAGGCTTGCAGACTCAGTGTGTCCAGGTTGACGAGGACTGTAACTCACTGAAAAAAGATCCTGACAGGTGTCATCGTTGTTTAGAGATAGATAAATCAATTGCTGAAAGGCGTAACTCTGCTTGCTACCAACCAGACAAGTCTTTTGCCTGTGAACCATGCAAGGATGCTGAGGCTGTTAAAGTGATAAACATTGAAGACTTAAGTGAATCAACTTGCCTTGTAAAGAAGGGTCACAAACGTAAGCAGCGCCTCTACTCAGATGAGGAACATCTCTCCACTGAAGTGGAAGCCATATTTGGAGGGAAAAGCGTGGAAATGGATCTTAGTGTTGATGAGTATCTACAAGGCGAGAAACACCAACTGGGACGTCATGTGACTATGCTGCTCATTCTTCTACTCACGATTATAGTTGGTTTATTTCTTGCCTTGTGGTCTCTTCTTGGAGAGGATACAGGCTCAGGAATCTTTATTGCTTTGCGGATAGTGGATACTTTCTGTGTGTTTGGACAGGTTTTTGTTGCTTTTGCTTGTTTTGGACTTGTAAGACAGCTTATTATCATTCCCTTCTTAAGCAGATGGCGTAAGTTTTGGTATGGTGTGGAAGAAATCACTCTGCCAAAAGTTGAACACCTTGATCTCGCTGTTGTCGATCTTTGTGACAAGTTTAAGCGCTACCACAAACAGCGCTGCCAGCGGTTGATCGTCAGCGACAAACGTTATCGCCTACGTAAATACAAGTCCGTTTTTCGCGGGGATCGGCTTGTGGCCTGGTTACTAGAAGTTGGACTTGCAACTGACCATGACGCAGCTGTGCATTATGGGAACTGTCTTATCCTTGGCCGCGTGATACGTCATGTCACACAAGCCCATTTCTTTTATGATTCACCTTACTTGTACCAGTTCTGTACACAAAGCAAATCTTCTCAAGACGAGGTGTAG

Transcript

ANN12724-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7Z3F1	Lysosomal cholesterol signaling protein OS=Homo sapiens OX=9606 GN=GPR155 PE=1 SV=2
Q5R9A7	Lysosomal cholesterol signaling protein OS=Pongo abelii OX=9601 GN=GPR155 PE=2 SV=1
A2AWR3	Lysosomal cholesterol signaling protein OS=Mus musculus OX=10090 GN=Gpr155 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005762 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03547 all species →	Mem_trans	Membrane transport protein	Family	Interproscan
PF00610 all species →	DEP	Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004776 all species →	Family	Membrane transport PIN-like	Interproscan
IPR000591 all species →	Domain	DEP domain	Interproscan
IPR051832 all species →	Family	Regulators of mTOR signaling and Rac activation	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22829 all species →	DEP DOMAIN PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0023051 all species →	Biological Process	regulation of signaling	Interproscan
GO:0030514 all species →	Biological Process	negative regulation of BMP signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN12724-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.