Gene detail

Detailed information of ANN12730-RA in Leptoseris scabra

Genomic Location: Scaffold_7__1_contigs__length_55811456:3618123...3653010
NR annotation: XP_029179548.2, integrin beta-1 [Acropora millepora]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN12730-RA

ATGAAACAGGGGTTTATTAGTTTGGTGCTTGGTTTTGCCTTTAGCGGTTATTTTTACATCCAAGTTCCGCTCGTGGCCGTATACGTGACTGGTGACCCAAACCTGTACAATATGTCTGAAGTTATTTTAACTATCTACAACGTTGTAGTTAAAGGGTATCATGAATGCCCATTTTCTGTTGAACTTGGTGTAGAAGGGTGTACGAACATGGCAAAATGTTATGAGTGTATAGGGGAAGCTAACTGTGCGTGGTGTTCTGACGAGAACTTTTTAGGCAGTAGATGTGACACAATCGGGAGATTGACAAGCCTACAGTGTAAAAATATTTCCAACCCGTCTAGCAAACGTACAATTAAAGAGGACAACAATGTTGGCCCCAAAGTGCAAGTACAACCTCAAAAAATCAGGCTGGATCTTAGAACAGGGGAGCCTGCCAAATTTCAGATAACAGTGCGACCTGCAGAGAACTACCCAGTAGATTTGTACTACCTTATGGATATGTCACTTTCCATGAAAGATGACTTGGACAGTTTAACAAAATTGGCTGGAACAATAGCCAATGCTATGAATAACATTACCTCAAACTATAAGCTTGGATTTGGTTCCTTTGTGGACAAGACGGTTTCTCCTTTTATCAGAACAGAGATGAAGACATCATGTAAAGAATGCGAGGCTACGTATGGCTTTAAAAATGTTCTTTCTCTTGTAAAGGATAAAGGTTCATTTCAGACTAAAATTAATGAGCAGAAAATTTCTGGCAACCTTGATGCACCTGAGGGTGGATTTGATGCTTTGATGCAAGTGGCAGTGTGTGAAAAGCAAATTGGCTGGTCTCAAAATGGTACCTCACGACGCCTTGTTATATTTGTCACTGATGATTCATTCCACATTGCTGGAGATGGAAAGCTTGGAGGTATTGTGACTCCAAATGATGGAAAATGTCATCTGGATAGTAATGGAAATTACGTGAAGTCCAATGAACTGGATTATCCATCTCTTGCACAGCTACATGAAAAACTACAGGAAAGCAATGTTTTGCCAATATTTGCAGTCACACAGGCACACACCAGTCTTTATTCGAGTGTGAGTTCCATGTGGAGTGACCTGGGCGCGGTGACGGGAACACTTGCTGGTGACTCTGGGAATGTTGTGGATCTAATCAAAAACAAATATGAGCAAATTGTGTCTACAGTCAGTTTGGTGTACAAAGAGCCAGAGACAATCTCAGTTTCGGTCAAAGCTGATTGTGGACCGAATGCAGTTAGTAGTCAGAACCAAAAATGCTCAAATGTGAAAAAGGGAGAAGAGGTCAGTTTTGAGGTGTCTGTGAAATTAGAAGAGTGTCCTAAAACAGATGCGCAGAAAGAGAAGAGCTTCATTGTTCGTGTTCCTGGCTTTGGTGCTGTGGAGTTAGAACTGAACTACATCTGTCAGTGTGAGTGCGAGCAACCCAGTATGAAGGAATATAACAGCAGTAAATGTTCTGAAGGAAATGGGACTCTCGCGTGTGGATTGTGTGAATGCAACAAAGGAAGATATGGGGAAATCTGCCAATGTGACACGCCATTTGACAAGTCAAAGGGTCAGGCCAAATGCAAGAGTTCCAACTCATCAGATGAGCTACTTTGCAGTGGAAGAGGGGAGTGTGCTTGTGGAAAGTGTGTGTGCAGAGTGGAGCAGGGCCAGCGATTTTATGGAACACTGTGTGAATGTAATGACTTCTCTTGTCCTGAATATCAAGGCGAGCTGTGTGGAGGTAAGGAACCCACACGTGTGAAGCACAAAATGTGCTGTGTAACTCACAACGCAAACAGCGTTTCTGTTACCAATAAAACTCCACCTGACGTCTCGCATTACGCGGAGCCATTAGAACCCAGAGAAACTTTAAGAGAAGCGAAAATAAGCGAGCGTGACATTTGCTGCGTTTCAGGTCCTGATCATGGAGTTTGCCGTTGCCGTAAATGTCAGTGCAAAGACAAGTATTATGGTGACGTGTGCGATCAGAAGAACTGTACGTACTTCCCGCCCGAGACACAGTGCAAGAAAGATGCAAATTCTGAAATGTGTGGAGGTTCAAAGAGAGGGCAGTGTGTCGGGGATGATGTAAACTGCTTTAAGTGCAAGTGTAACAGTGAATATGATGGCGCATACTGTGAGAAGTGTCCATTGAACAGAGATGGCGATGATGTTAATGATAATGTTGTTATTGTTGATGGTGGTCATGATGATGATGATGATGATGATGATGGTGATGATTACTGCGAGGACGGTATGTGCAAACGGAATGAGGACTGTGCGCTGTGTTCCACGTTTCAAGGAAAGTCTTTAGACGAATGTAAAAAGGAAAAGAGATGTGAGGAGAGTGTTCTGGAAGTTCAAATCGTGGATGATATCAAAACAAAGACAGATGAAGGATTGTATCGCTGCGAGGCAATTGACAGCGAGGACAGTTGCACCTATTACTTTACCACCCAAACGGAGGAAAACAGCAAAAACTTTGTGCTGTTTGTTCAGAAAGATAAAGTGAGTTGTCCCAAGGAAGCTCCCATCCTGTACATTGTTCTTGGAGTTGTTGGTGGCATTTTAGTCCTCGGTCTTATCATCTTACTGCTCGTTAAAGCTTTTGTCACCATGGTGGATCGCATTGAATACCAAAAGTTCGAGAGAGAACGGATGCACTCCAGATGGACAAAAGAGAAAAATCCGCTTTATCAAGCTGCCAAGACCACCTTTGAGAACCCCACGTACGCTGGCGGAAGACAGTAA

Transcript

ANN12730-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P07228	Integrin beta-1 OS=Gallus gallus OX=9031 GN=ITGB1 PE=1 SV=1
P05556	Integrin beta-1 OS=Homo sapiens OX=9606 GN=ITGB1 PE=1 SV=2
P09055	Integrin beta-1 OS=Mus musculus OX=10090 GN=Itgb1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000809 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08725 all species →	Integrin_b_cyt	Integrin beta cytoplasmic domain	Domain	Interproscan
PF18372 all species →	I-EGF_1	Integrin beta epidermal growth factor like domain 1	Domain	Interproscan
PF00362 all species →	Integrin_beta	Integrin beta chain VWA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015812 all species →	Family	Integrin beta subunit	Interproscan
IPR014836 all species →	Domain	Integrin beta subunit, cytoplasmic domain	Interproscan
IPR036349 all species →	Homologous_superfamily	Integrin beta tail domain superfamily	Interproscan
IPR012896 all species →	Domain	Integrin beta subunit, tail	Interproscan
IPR040622 all species →	Domain	Integrin beta, epidermal growth factor-like domain 1	Interproscan
IPR002369 all species →	Domain	Integrin beta subunit, VWA domain	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR032695 all species →	Homologous_superfamily	Integrin domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10082 all species →	INTEGRIN BETA SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005178 all species →	Molecular Function	integrin binding	Interproscan
GO:0005925 all species →	Cellular Component	focal adhesion	Interproscan
GO:0007160 all species →	Biological Process	cell-matrix adhesion	Interproscan
GO:0007229 all species →	Biological Process	integrin-mediated signaling pathway	Interproscan
GO:0008305 all species →	Cellular Component	integrin complex	Interproscan
GO:0009986 all species →	Cellular Component	cell surface	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0033627 all species →	Biological Process	cell adhesion mediated by integrin	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05719	ITGB1, CD29; integrin beta 1	-	CD molecules	ko04090	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.