Gene detail

Detailed information of ANN12861-RA in Leptoseris scabra

Genomic Location: Scaffold_7__1_contigs__length_55811456:6642719...6653001
NR annotation: XP_015753292.1, PREDICTED: uncharacterized protein LOC107333045 [Acropora digitifera]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN12861-RA

ATGCAAGTAGCTTCATTACGAAAAACAGTACTTTGTAGCATCAGGAAAGCTATGGAAAACTGCACAAGCAAATATCTTGCATCGAGGAAAGAAAGGACTTATAAAAATGTTAATCATGAAATGACACATGTCAGTGCAAAGGAATCTAGCGATATAGAGACCAATCCTTATCCTCGTGTCACTGCTTTACGTGGTCTCTTCGATCCTTGCGTTATTTCAAACAAAGAAGCACATATTATAAATGGGAATATATTCATCAGTAAAGCAACAAATTCCAAGACCTCTTCCATCAGTGAACTGTCACAACCGAGAACAAATAATAGAAGACATTTCATTAATTATTGCCTCACTCATTCAGGCAAGTTTTCATGTGCGGTAGATTGTTTTCTTGAACTTAGCGTTGCTATTTTTAAAGATTCTCTGAAAGATATCGAACGTAATGAGTTTTTTCAAACTGTATTTGATGCATGTCTACAATTAGAAAGCCATGATGTGCAAACAGAAATGGCAGTAGTTCGAGAACCTGTTTGGGTATATTTAAGACAACATTGCAACTCATTTGCCGCAATGTCTGCAGATGCTGTATTTAGTGACATATTTACGTTGGATACAGTTGGTATGATGACGGAGGAATTAAAATCCCTTTTTCTTATACAACAAAGTAATCAGTCAGTTTGTTCATCGTGTAACAATGCAATTATAAAAAACACAGCCATATTTGTACTTTACATAAATTCTCCGAACTTGCTTCACAATGGCTTAGAGAATTATGTTTCTGAGGCTATATTACCAAATAGCGGTGCACTCTACTGTGATTTGTGTCAAGAGCATTCTGGGGATCTTTCAATGCTACAACATTTTGTTACGCTTCCACGATTTTTAACTGTGGAACTGTCAACCAATTATATTAATCAAATATTTTTTCCTTTGACTATGGATGTACTTGGTCAAAATTATGTACTTAAAGGCATGGTTCGATGTATAAGTTCTCATTTTACAGTTGCTATAAAAGATGATTCTCGTTGGATATATGTAGATGATATGTGTGTTTCAGTTAGAATTTACGCTTCATTTCAGCACCTTTTGAGTAGCCATTCTAACGGTTGGTTTTTTGCTATATATGAAAAGTCTTTAATAAGAGATAATAATGGTATACAAAAAAATTCAGTAGCGTGCGAAACTGTGCAACAAAATTGTAATAATGTTCTTGTTGGTACTTTACCGAAAGATGTACCTATTATTAAAACTACAAATAATGAAACTATAACGAAGAGTTCTGCTACAGCTCTATATGCAATTTGTTTTTCTGTTGTTAAACCTTGTAGTTATTGGAAGTCTGATACATTAGATGCTCTTGTTGAATATGGAAGTGCTTTCTTTACTGAGACTATTAAAAATCAGACAAGTTCCAGTGAACTACCACAGAATGTCAATATATACGGTGCCAATATTAATGTAAAGCTTGTTACAAGTAATAAAGGAATTCTTATATGTAATTCATTTTTTAGTAAATTAGCCCTTGAGAGGTTGATGCTGCAAAATGCAACTAAGAGTTCAGGATTTTTACTTCAGTTGCCAAGCCTATGTTTAAGTTGCGTTTTTCACAAAACCAGCAGAAATATAACATTTTACTTAATTTCTTTGAATAAAATTCAAGGACTTGATGTACACAAAGTGAGTGATAAAAATTATTTAGTCGAAATGGTCTGTCAAATTGTGACAAATACTGTAAAGTCAAATGAAATAGAGTATTTTTTTCAGAGTGTATTGTGCACTTGTGAGTTGAATAAAGGTGAAAAACAAAAGATTATGAAATGCCACAAATCTGCTAAGTGCAAAAAAGAAATTGCAATTAAAAGGAGAAAGTCTTATACTCAATTTGAGCCTGCAAGGAAAAAAATCTGCTTAGATAAGCGCCGTGAGTGTTACAGTAATGAAAAACAAACAGTTCTGATTGCACGCACTGAAAAATATAAATCTATGAATAGAAACAAAAAGAAGAATCTTCTTGTTGCTCGTGCTGAAAAATATAAATCTATGGATGCAAATGAAAAAAGAAATCTTCTCACTGCTTATGCAGAAAAATATAGATCTATGGATGTCAATGAAAGACAGAATCTTCTAACTGCTTGTGCAGGAAAATATAGATCTATGGATTCCAATGAAAAACAAAATCTTCTCACTCGTTGTGCAGAGAAATATAAATCTATGGATCCCAATGACAAACAAAATATGCTCACCCATTGTGCAGAGAAATATAAATCTATGGATCCCAACAAGAAACAAAATATGCTCACTCATCGTGCAGAGAAATATAAATCTATGGATCCCAATGAGAAACAAAATATGCTCAGTCATTGTGCAGAGAAATATAAATCTATGGATCCCAATGAGAAACAAAATATGCTCACTCATTGTGCAGAGAAATATAAATCTATGGATCCCAATGAGAAACAAAATATGCTCACTCATTGTGCAGAGAAATATAAATCTATGGATCCCAATGAGAAACAAAATATGCTCACTCACCGCGCAGAAAAATATAAATCTATGGATCCTCATGAGAAAGAACAACTCTTAGCTAAAACAAGGCAAACTTATCACAACATGAAAAGCGAAGAAAAAGAAAAATGGCTCGAAAAGATCAGGAGAATGGCTAGGAATACAGAAGAAAGAAAAGCTATCTCAGACAATGACTTGGACTTCTGTATTGCATCTTTCCAAAAAGCAGTAAGAGAAGGTCCTTATTACATATGTTCTGTGTGTAATAGAACTCTTTATAGGAAAACAGTAATAGAATTAAAGAAAATTAAATATGTCAAACAGCATCTTTTCACAGGAAAAATGTCTTTTGATAAGAAAGAATATATATGTAAAACATGTCACGCTAAATTGTTAAAAGAACAAGTTCCCTGTCAAGCTGTTTATAACAAATTAATGGTTGATGAAACCCCCCCAGAACTAGAATGTCTAGAAAAACTTGAGCAGATTCTTATATCTCAACGCATTGTCTTTGAAAAAATAGTAATTATGCCCAAAGGTCAACAAAGGAAAATTAAAGGAGCTATCTGTAATGTGCCTGTAGAATGTGATCATACCTGTAATGTCTTGCCTAGACCTCCTGAAAGCTCAGGAATAATTATGTTAAAACTTAAAAGAAAGCTTGATTTTAGAGGCCATGTTTATTTTCAAGCTGTACGACCTGCAGTTATACTCAATGCGCTAAATTGGCTCAGAATAAACAATCCTTTATATAGTGGTATAACAGTTAATATTGAAAACATTGACATAAATCTGAGAGAAATGCAGTTACGAGCTAATTCAGACAGTGATGGTGAAGAGTCTCCAATTATTCAGGTATCTTGTGAACAGAAAGCAACAAATGATCAAAGTGAGGAGGAAAGAGATGATCCTTTGAATGAATTTAGAGCAGCAACTTCTGAAACGTGTTTACAGTCAGTGCTACCAGATTATCCTGTAAATGTGGACAAAAATACCAGATTAAAGTCTCATGGAAATGAAATTTTTAATATTGCACCAGGTGAAAATAAACATCCAGTTTCATTCATGACTGATAAACATTGTGAAGAATTAGCATTTCCAGTATTATTCCCAAAGGGCAGATTTGGCTATACTGTAGAGAGAGCGGTCAATCTGTCACCTACAAAATACTTCAATGCCCGTCTTTTACATTATAGTGGTAAGTTTGCAATGAATCCTGAATATTTGTTTTTTGCGCAGTTCATCATAGAACAAAAAAAAGTTTCAGATAGTATTGCTATTGCTCTGACAAAAGTTCATGGACATTCTCTGACTGCATCTCATTTAAGATCTAATGTGCAAAATTTTCAAAATCTTATCTTTCAAGACCAGGCTTACTTGTTTTTAAGACAAATTCCAGGTACACCACCATACTGGCAAAAATTTATGTATGAAGTTATAGCGATGGTAAAACAACTTGGAATTCCAACATGGTTCATGACATTGTCTTGTGCTGACCTTCGATGGCCTGAGCTGTTTCAAATTATTGGGAAAATACAAGGACTTAATTTAACTGATGAAGAAATTGAAGGATTGTCTTACAATGAGAGGTGCTCTATGCTTAATTCTAATCCTGTTGTTGTTGCTAAGCATTTTCAGTATAGAGTAGAGACATTTTTTACTGAAGTGTTATTGAGCAAAGCAAATCCTATTGGTAAAATAGTTTATTATGCTTTACGTATTGAATTCCAAATGAGAGGATCACCTCATTTACATGCACTAATATGGACAAGTGATTGCCCAAAGTTAACAAATGAAACAAAAGAAGATTACATAAAATATATAGACAATCATGTTCAAGCATACTTGCCAGATAAACAAAAAGATTCTCAATTATTTACCTTAGTTCAAACTTATCAGAAGCACAATCACTCAAAGAGTTGTAGAAAATATACTAATGTTCCATGCAGATTTAATTTTGGACAATTTTTCACAAAGAGAACAGTAGTAGCAGAACCACTTTCTGAAAAGTTAGATGAAGAGTTGAAAAGAGACATTTTAACAAGAAGAAATGAAATTCTTTGCTTAGTAAAAGAAGAAATAAATAAAATCTTGAACCCAAATAAACCACAGTATAATCCTAAGACAACGGAAGAAAAACTTTTGAGTTCATTAGGTGTTACAGAAGAACAATATTACTGGGCCTTGTCTATATCTGGTGATTCTGATTTTGATCTGCATCTTAAAAGACCGCTTGATAGCTGTTTTATCAATAATTATTTTGTTGCTGGAATAAAAGGTTTTAGGGCTAACGTTGACTTACAACCTGTTTTTAACCATTACAAATGTATAACTTATGTTTGCTCATACTTCACAAAGGATGAAACAGAATGTTCACAGGCTATTGCCAATGCAGCAAAAGAAGCAAAGACTTCAAATTTAGCCATTAAAGACAGTTTGAGAAAAATAGGAGCGGCTTTTCTTTCTACTAGAGAAGTAAGTTCACAAGAATGTGTATATAGATGTATGCCTGAACTTTGGTTGAGAAAAGTTTTCCCTAAAACAGTTTTTGTGAGTACAGATTTACCTGACAATAGAATTCGAGTTGCAAAGAGCAAAATAGAACTTGATGAGTTACATGAAGATAGTACAGATATTTACAAATCCAATATAATAGAACGCTATAGCATCAGACCTAACAAAATCCCAATTATTGATATGTTATGTCTAGCTGAATTTGCTGCATATTATTACAAAGAATACAAAAATGATTGTGTAACAAGCGATGCACAACCTGAAATTCTTACAGATGATGTTATAGAATCACATGTTCAATTTACTACAAATGCAGATGTCATTAACTATTTACCATCCAAAATAAGATTAATAAACACAAATGAAGTTATGAAATGTAGAAAAACTAAGGCTGTATTACGGTATCATAGACCCAACAAAGTAAAAGAACCCGAAAAGTACTTTCACCACTTACTTATGCTGTATTATCCATGGCGTAATGAAGATAGTCTTATTGGCAATGAACAAACATACGCATCAAGATTTTATGAACCGAAAGTGCAAGCTATTGTTGAACAAAAAAGAACAATATTTGAACCTGAAGCAGATGCTATAACAGAAGCATTAGAAGCCCTAAGAAATAGTGAAGTTAATAATTTTAGCCATTCCTTTGATTCTTTAAATGATCAAGAAAATGAAGACTTGCAATTAGATATGCAAAGTAATGTTGAAAGTGATGACGAATCATTTAATGAACAAATAATTTCACATCTTTCTTCCAATTCTAGTAGTGATCAAGTGTCTACAAATGCAACAATTACAAGTTATGTTCAACCAAGGGAAATTTCTGATGATCTATTACGTGAACATATAAGGTCATTAAACGAGAAACAGCGTATTGCGTATGATAGTGTGCTACGCTGGTGTAGAAACAAAGTTAAAAATCTTCGTTCTCTAAAACCTTACGACATTAACCCAATATATCTTTTCATGACTGGAGGTGCTGGCTCAGGGAAAAGTCATGTAATAAATACAATATATCAGACAGCAATTAAAACATTTAGACGGACAACAAGTAATCCTGATTTGCCAACAGTACTGTTAATGGCACCAACTGGTGTTTCTGCAATACATATAGGCGGAACAACTATACATTCAGCGTTGGCTATCCCTAAAGAAACCGGTGACAATATTCCAGCAATGTCTGACCAAAAGAAAACACAAATGAGACTTACACTGTCGGAATTAAAGCTTATTATAATAGATGAAATTTCTATGGTTTCTAACATTACTCTTCTTCATATACATCAAAGGCTAAAGGACATTTTTGGATCATCCAGCTCTAAACTATTTGCTGGTATAAGTATTATAGCTGTAGGAGATTTGTATCAACTACCACCTATACGGAGAAAACCTATTTTTGAAAAATTCAACAATGAGTGTTTCAATTTATGTCATCCATGGCATGTCTTCACGATGATAGAATTGACTGACATTATGAGGCAGAAAAATGATCGGCAGTTCGCCGAAATTTTAAACAGATTTAGAACAGCTTCACAAACTGAAGAGGATCTTAATTGTATTAATTCTCGAGTATTAGTCCCATCAACAAACAATTACCCCTTGAATGCACTTCACATCTGGGCAGAAAATGATCCTGTTAATGAACATAACAACAAACAACTTTTACAATTATCTACACCTTTGTTTGTACTTAGAGCTACAGACCAGTATCCATCAAATGTTACAAAACAAGATATTGACAAAGTATTATCGAGAGGGAGATCTGAAACAGGAGGGCTTGAATTTGAAGTGAAGATTAAAGAAGGTGCTAGAGTAATGCTTACTACAAATATTAATATTGCAGATAGACTTATAAATGGACAAATGGGAACTGTTGTTAAGATTCATGTCAGTAAAAAAACACAAAAACCAACTGTGGTTTATATAAAATTTGATGATAATGAAGCAGGAAGAACTTTAATACAAAACAGTAGTAGTATATTTGCTAGAGAAAATGCTGTTGTTCCTATTGAACAAGTATTATCAAAAATAAAAGTTCGACCAGTTAGAAGCAATCCTATCGATATAATCCTAGGAGATTTCAATATTAACTATTTTAGCAGCAACGACATGGAACTACTCTCATCATTAATGCAGTCTTTGGATTATTTACAGATTGTAGAGATGCCTACATTTAATTCAGGCACAGGCGACAGTTTCAAGTTTGGAAAGAATTCTGCAAACCTGAAGTATCTCAGTGAAGCAAAGTGTCCAGTGACAGACAATGGAATAAAATACATTGGGAAGCACTGTGTTAAGTTAAACTACTTGAATATCAAAGGATACAAAGCTGTACGAGATGTCGGCATGACTCACATCGTTCAAAACTGCTTCAAACTGATATTTCTTGATATGGGGAAGTGTAACATCACGGATTATGATGGTTATGGTATGCATATTATCAGCATTCATTGGCCTCCGTTGAAGAAACTCATTATACGAAGATGTGAACAAATGACAGCTACAGGAATCAAGACTATTGCTACACAATGCTGTAGTTCCCGGCAGTACTTACAAGTGCAAGAAATCTTAGAAAACTACAGATGA

Transcript

ANN12861-RA

Protein

ANN12861-RA

MQVASLRKTVLCSIRKAMENCTSKYLASRKERTYKNVNHEMTHVSAKESSDIETNPYPRVTALRGLFDPCVISNKEAHIINGNIFISKATNSKTSSISELSQPRTNNRRHFINYCLTHSGKFSCAVDCFLELSVAIFKDSLKDIERNEFFQTVFDACLQLESHDVQTEMAVVREPVWVYLRQHCNSFAAMSADAVFSDIFTLDTVGMMTEELKSLFLIQQSNQSVCSSCNNAIIKNTAIFVLYINSPNLLHNGLENYVSEAILPNSGALYCDLCQEHSGDLSMLQHFVTLPRFLTVELSTNYINQIFFPLTMDVLGQNYVLKGMVRCISSHFTVAIKDDSRWIYVDDMCVSVRIYASFQHLLSSHSNGWFFAIYEKSLIRDNNGIQKNSVACETVQQNCNNVLVGTLPKDVPIIKTTNNETITKSSATALYAICFSVVKPCSYWKSDTLDALVEYGSAFFTETIKNQTSSSELPQNVNIYGANINVKLVTSNKGILICNSFFSKLALERLMLQNATKSSGFLLQLPSLCLSCVFHKTSRNITFYLISLNKIQGLDVHKVSDKNYLVEMVCQIVTNTVKSNEIEYFFQSVLCTCELNKGEKQKIMKCHKSAKCKKEIAIKRRKSYTQFEPARKKICLDKRRECYSNEKQTVLIARTEKYKSMNRNKKKNLLVARAEKYKSMDANEKRNLLTAYAEKYRSMDVNERQNLLTACAGKYRSMDSNEKQNLLTRCAEKYKSMDPNDKQNMLTHCAEKYKSMDPNKKQNMLTHRAEKYKSMDPNEKQNMLSHCAEKYKSMDPNEKQNMLTHCAEKYKSMDPNEKQNMLTHCAEKYKSMDPNEKQNMLTHRAEKYKSMDPHEKEQLLAKTRQTYHNMKSEEKEKWLEKIRRMARNTEERKAISDNDLDFCIASFQKAVREGPYYICSVCNRTLYRKTVIELKKIKYVKQHLFTGKMSFDKKEYICKTCHAKLLKEQVPCQAVYNKLMVDETPPELECLEKLEQILISQRIVFEKIVIMPKGQQRKIKGAICNVPVECDHTCNVLPRPPESSGIIMLKLKRKLDFRGHVYFQAVRPAVILNALNWLRINNPLYSGITVNIENIDINLREMQLRANSDSDGEESPIIQVSCEQKATNDQSEEERDDPLNEFRAATSETCLQSVLPDYPVNVDKNTRLKSHGNEIFNIAPGENKHPVSFMTDKHCEELAFPVLFPKGRFGYTVERAVNLSPTKYFNARLLHYSGKFAMNPEYLFFAQFIIEQKKVSDSIAIALTKVHGHSLTASHLRSNVQNFQNLIFQDQAYLFLRQIPGTPPYWQKFMYEVIAMVKQLGIPTWFMTLSCADLRWPELFQIIGKIQGLNLTDEEIEGLSYNERCSMLNSNPVVVAKHFQYRVETFFTEVLLSKANPIGKIVYYALRIEFQMRGSPHLHALIWTSDCPKLTNETKEDYIKYIDNHVQAYLPDKQKDSQLFTLVQTYQKHNHSKSCRKYTNVPCRFNFGQFFTKRTVVAEPLSEKLDEELKRDILTRRNEILCLVKEEINKILNPNKPQYNPKTTEEKLLSSLGVTEEQYYWALSISGDSDFDLHLKRPLDSCFINNYFVAGIKGFRANVDLQPVFNHYKCITYVCSYFTKDETECSQAIANAAKEAKTSNLAIKDSLRKIGAAFLSTREVSSQECVYRCMPELWLRKVFPKTVFVSTDLPDNRIRVAKSKIELDELHEDSTDIYKSNIIERYSIRPNKIPIIDMLCLAEFAAYYYKEYKNDCVTSDAQPEILTDDVIESHVQFTTNADVINYLPSKIRLINTNEVMKCRKTKAVLRYHRPNKVKEPEKYFHHLLMLYYPWRNEDSLIGNEQTYASRFYEPKVQAIVEQKRTIFEPEADAITEALEALRNSEVNNFSHSFDSLNDQENEDLQLDMQSNVESDDESFNEQIISHLSSNSSSDQVSTNATITSYVQPREISDDLLREHIRSLNEKQRIAYDSVLRWCRNKVKNLRSLKPYDINPIYLFMTGGAGSGKSHVINTIYQTAIKTFRRTTSNPDLPTVLLMAPTGVSAIHIGGTTIHSALAIPKETGDNIPAMSDQKKTQMRLTLSELKLIIIDEISMVSNITLLHIHQRLKDIFGSSSSKLFAGISIIAVGDLYQLPPIRRKPIFEKFNNECFNLCHPWHVFTMIELTDIMRQKNDRQFAEILNRFRTASQTEEDLNCINSRVLVPSTNNYPLNALHIWAENDPVNEHNNKQLLQLSTPLFVLRATDQYPSNVTKQDIDKVLSRGRSETGGLEFEVKIKEGARVMLTTNINIADRLINGQMGTVVKIHVSKKTQKPTVVYIKFDDNEAGRTLIQNSSSIFARENAVVPIEQVLSKIKVRPVRSNPIDIILGDFNINYFSSNDMELLSSLMQSLDYLQIVEMPTFNSGTGDSFKFGKNSANLKYLSEAKCPVTDNGIKYIGKHCVKLNYLNIKGYKAVRDVGMTHIVQNCFKLIFLDMGKCNITDYDGYGMHIISIHWPPLKKLIIRRCEQMTATGIKTIATQCCSSRQYLQVQEILENYR

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9QSK3	Uncharacterized protein 030L OS=Invertebrate iridescent virus 6 OX=176652 GN=IIV6-030L PE=3 SV=1
Q57YG0	ATP-dependent DNA helicase PIF7 OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185431 GN=PIF7 PE=3 SV=1
Q196V4	Uncharacterized protein 106R OS=Invertebrate iridescent virus 3 OX=345201 GN=IIV3-106R PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000138 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14214 all species →	Helitron_like_N	Helitron helicase-like domain at N-terminus	Family	Interproscan
PF20209 all species →	DUF6570	Domain of unknown function (DUF6570)	Domain	Interproscan
PF11304 all species →	DUF3106	Protein of unknown function (DUF3106)	Family	Interproscan
PF05970 all species →	PIF1	PIF1-like helicase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR025476 all species →	Domain	Helitron helicase-like domain	Interproscan
IPR046700 all species →	Domain	Domain of unknown function DUF6570	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR021455 all species →	Family	Protein of unknown function DUF3106	Interproscan
IPR010285 all species →	Family	DNA helicase Pif1-like	Interproscan
IPR006553 all species →	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR051055 all species →	Family	PIF1 DNA helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47642 all species →	ATP-DEPENDENT DNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000723 all species →	Biological Process	telomere maintenance	Interproscan
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25165	HELZ2; 3'-5' exoribonuclease HELZ2	EC:3.1.13.1 EC:5.6.2.6	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.