Gene detail

Detailed information of ANN13173-RA in Leptoseris scabra

Genomic Location: Scaffold_7__1_contigs__length_55811456:13139430...13155397
NR annotation: CAH3145559.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN13173-RA

ATGGGTTTGAAGGGATTGGCGTCGATTTTGTGGCTTTCTCACTGCTTGGCACTGGTGTTTGCAGTGTCTCGCCAGTTCACTGGTGAGGGTTATCTGGAGTACAACATCCAGTCCATTTCAAAGCACCCTGCCATCAACTCTGATGCTGACACGTTAAAACTTGAATTCAAGTCAGTACAACCCTCTGGGCTCTTGTTTTATGCCAGAGGTTCAGGAGGCGACCAAGCAGACTACGTTGTCGTTGAACTTGTGGGTGGAAGAATGAGATATGCTGTGCGATATGGATTTAGACAGGATAAAGATGATGCACATGAGGTGTACCTTGGCAAAAATCTTGATGATAACAGACCACATACATTAACAGCGACCCGCAACAAGGAGGACACAACCATTGTACTGGATGAGGGATCTGATCAGGAAAGAGAAGAACAGACAATTACCACTTACTATAAAAAGCTAGATATAGACATTGGCATTTTTGTTGGTGGTGCAACAAGTTTCCAAAGCCTCCTTTCTGTCAAATCAAATGCTTACTTCCTTGGCTGCCTAACTAATGTGGAATTTAAACAACCAGGCAAAGATGTTATCAAATTCCTTGACAAAGATGTTTCTGTTGCGCATCCAAGTAGTATGGATAAAGACTGCACAGCACAAGCCTATAAACCATTTACATTTAGTGCAGTGGATTCCAGCTATATTTGTCCAGTTGATGGCCTGTCTGGACAAACTAATGTCAAGGGAAGCTTAATGTTCCGAACATATTTGGATAGCGGGACTCTCCTGAAGCAAGTCAATGGCAAAAACAAGTTTGAGCTTACGTATAGGGTGCGCTATGTTGAGTTGAAAGTTTCTGTTGATGGTACTGAAACCACTGCTTTCATCAGCTACAATCAAGGTGAGGCTACAACAATGAACAATGGTAACTGGCATCACGTCGAGTTCACCATCTCGTCTTCAACTATCGAATTGACAGTTGGCAAAAAGTTTGATGCAAGAGTTCCCCCTACATTCCCAAATAACTTCTTTGGTGGTGAAGTGACAGCTGGTGGATTTATTGGTTGTATGAGACAGCTGAGCATCTTCAATAAACCCTGCCAGCCAGATGAAAAATCAAAGATCAATAAGGTTGAGTGGAACAGTTGCAACATCACTGACTTTTGCGTCTTTTCTCCCTGTTTGCATAATGGCAAGTGTGACCAGGATGGAAAGTCGTTTAACTGTGAATGCACTGGAACAGCATACAACAAACCAATGTGCCAATTTCCTAAATATGATATCAGTTGCGAGATTCTGAAAAGGAAGCACGTCCTCCCAGATAATTACTACACCCTTGATTTTGATGGTCCGGGACCCCTCAAGCCTGCCTCAGTTTTCTGTAACTTTACAGCTGAGCCACCTACCACCAGAGTGCTGACTAAAAATATTGGGATCAAGTTGATTTCAGCTGACGCACCTGGCACACCCAATTCTCAAAAAATAGAATACATTCCCAGCTTAGCTGCTGCTAAAGCTTTGGCTCGGCACAGTGAATGGTGCACACAGTACATTGAGTTTGGTTGCAGAAGAGCCAAGTTACTTGATGTTGGGGGTCCAGAGAGGCTTGGTCACTGGGTGTCGGCTAATGGAATGTACCAGGACTACTGGGGTGGCGCTGAACCTGGCACCAAACAATGTGCTTGTGGACAAGAAGGAAATTGTGTGGAGAATAAAAAATGCAACTGCGATGCTGCACAGGACAAATGGAAAAGTGATGGCGGGGACTTAAATTCGACAACTCTTCTTCCTGTTGCAGAGGTGGTGTTTAAGGGTGTCATCAAGCCAGGAGAAGCAAACTATACTGTTGGCTATCTTTATTGCGCGGGCGACATCAGCAACACTGCGACATTTGTCAATGAAGATGGTTTCATCAAACTGAAGAAGTGGGCTCCACCATCAGATGGCGTTATCTCACTCTACTTCAGAACACCTTATCCTAAAGGCACATTATTGTACAATGGTGTCCTAAGCAAAGAATACTTCCATCTTCAAATCCTCAATGAAACCACCATTCGTCTGTTGTACAACATTGGCAATGGTGCAAGGAACATTGATATTAGTTTGGAACAAAACAAACAGATCAATGACCGGTCGTGGCACAAGGTGGTGGTTTATCACAACATGAAACATTTTGGATTGGAACTGGATGACAAAAAACTTAAGAACGACAATCCTTTGTTTCTGGAGAGAGAACTTGACCTGGAAAACGAACTCCATGTTGGAGGCTATCCGTATGATGTGGTAAAAGGATTTGTGGGCTGCATTCGGGGACTGGTCATCAATGGTGAAGTTCAGGATTTAAGTAAGTTGTCAAAGGAGGCAAACTATGTGGAAAGTGGTTGTGGAGTTGCATGCAAAAATCAAAAAAACTGCAGGCATGGTGGAAAATGTCTGGATAACTACAATGTGTACTCCTGTGATTGCAGCAAGACTCCATTTTATGGTTACTTCTGTCATGAAGATAAGGGTGCATCCTTTGAAGAAAAGGACAGTGAGTTAAAATACACCTACTCCCAACCCCAGTCTGTTCCCAATGTCGACATTATTTTTGGCTTCAAGGTGAACGATGAGAAACGTTGCAGTGGTGACATTGTTCGACTTGATAGCAAAGACACTGGACAGTATTTCTTGATTTCCCTCAACACGAAACTCAAGTTTTCTTATGAAGGCCCTGGAGGATTTGGATCCCTTGAAATAGATCCCAGACAAGGCCAGGATTTCTGTAAAGGTAGGCATGCATTTGCCTTGAGTCGCAGAGGCAAGAAGGTTAACTATACTGTTGATGGAGTGAAGGATGACAAGTACAAATATGAAAATGACAGGCTGAATGGGCTCTTCTCCAGAGTCTTTCAGATAACAGTTGGAAAGAAAGGAGACACTGGATTTAAGGGTTGTATAACCGGTCTCAAAGTCACACTGGGCAAGTTCGATAGCAAGCCCATCACTGTTGACCCTATCAAGGCATATTTCTATGATGACAAAACAGATGGAATCACTGTGGAGGGCCTTAGCAAGGATAGTAAGGCGAAATGTGGTCCAGAGCCAGATGATGTTCCTCCCACACCAACACCGCGGCCTATCGGCCAGCGACCTGACGTCTCAACTACCGCCTCTACTACTAAAGATCCCGAAGAGCAAGCTGAAGATGACACCAGAATTGCCATTATCGTTGTGGTAGTGCTTATTTTAGTGCTTATTTTTGTGGTGTTGGCGATCGTGATTTACTGGTACTGGGCACGTCATAAGGGAGAATACCACACCCATGAAGATGATGACGACGTGAAGGGCACTGATCCATACATTGACTTGACAGCACCAAGAAAGCCCTACGTAGAAGAGACGGAAAAGAAGAAAGAGTGGTACATTTAA

Transcript

ANN13173-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B8UU78	EGF and laminin G domain-containing protein (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
Q9CPW0	Contactin-associated protein-like 2 OS=Mus musculus OX=10090 GN=Cntnap2 PE=1 SV=2
Q0V8S9	Contactin-associated protein-like 5 OS=Gallus gallus OX=9031 GN=CNTNAP5 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000572 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02210 all species →	Laminin_G_2	Laminin G domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR001791 all species →	Domain	Laminin G domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR050372 all species →	Family	Neurexin-related cell adhesion and synaptic protein	Interproscan
IPR003585 all species →	Domain	Neurexin/syndecan/glycophorin C	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15036 all species →	PIKACHURIN-LIKE PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for ANN13173-RA in Leptoseris scabra.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07380	CNTNAP2; contactin associated protein-like 2	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.