Gene detail

Detailed information of ANN13187-RA in Leptoseris scabra

Genomic Location: Scaffold_7__1_contigs__length_55811456:13282110...13285371
NR annotation: XP_029207020.1, homeobox protein ceh-13-like [Acropora millepora]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28600	Homeobox protein Hox-A7 (Fragment) OS=Ovis aries OX=9940 GN=HOXA7 PE=2 SV=1
P14839	Homeobox protein Hox-B6 (Fragment) OS=Gallus gallus OX=9031 GN=HOXB6 PE=3 SV=1
P17277	Homeobox protein Hox-A4 OS=Gallus gallus OX=9031 GN=HOXA4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000082 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR046327 all species →	Family	Homeobox protein Hox-A1/B1/D1	Interproscan
IPR020479 all species →	Domain	Homeobox domain, metazoa	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45946 all species →	HOMEOBOX PROTEIN ROUGH-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN13187-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.