Gene detail

Detailed information of ANN13204-RA in Montipora grisea

Genomic Location: Scaffold_6__1_contigs__length_51879999:36519427...36545515
NR annotation: XP_029200358.2, protein Red-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN13204-RA

ATGCTTAATGGAGGAATACCACAGGGTACCAGGTTGGGTTCGATATTATTTGCTGTCATGGTGGACGATCTGTTGAGATCCTGGGGTCCTAGGGTTAAATTTGTTGATGATTTAACTGTGTTAGAAATCGTCCCACGCAACTCTCCATCAGTCATGAGGTACATTGCCAATGATATTCATTCTTTTGCTATCAACAACAATATGAGGCTCAATGCCAAAAAGTGCAAGTTATTGCCCGTTAGTTTTCTTCATTATGACAGTAGTGTGTGGCCGCCCCTTTTTCTCACTGGGGCTGAAATAGATTCTGTTGAGTCCTTCAAGTTCTTAGGCATATATATTTCATCTGATTTGTCGTGGACGAAACACTGTGATGTCATAGTGAAGAAAGCTAATCGTAGACTTTATGCAATTAGGAAACTTAAAGGTGCTCGCGTTAAGGAAAACGACTTAGTCGCGGTATATTGCTCGTTAATTCGATCCATATTAGAGTATGGATCAGTTGCTTTCGCGCATCTCCCTAATTACCTATCCAACACTTTGGAAGGAATTCAAAAGAGAGCTTTGTCGATCATATACCCTGAATCTTCCTATGATGTTGCTATGATGTTGTTGATGTTGTTATCTAATTTAACTACATTGGTTTCCCGACGAGCCGACGCTTGTCGTAGGTTCATTGAAAGCATCCAACCCAATAACCCACTTTATCATATTATAAAACATAACTGTGCTGTGAGGGTGGATAAGCCATATAATCTGCGAGATAAAACTCTCACAAATGAAGATTTCAGAAAGCTTTTGATGACACCGAGGTCAGGTGCTCCATCTGTAGCTCCACCTTCGGCAAAGCCTTCAAGTCACTCTCTTAAGAGTGTTCCAAGTAGCATTCATTCACATCGCATCAGCAGGGATGATGATGATGATGATGAGGATGATGATGAAGCAGATGAAAATGATCCTTGGTCAAGGAGGAGAAAGAAGAAAAAGTATTATGCAAAACTTAAGAAGATGGAAGAGGAAAGGGAGCAAGAACTTGCCAGTAAATACAGGGATAGGGCAAGGGAGAGACGAGACGGTCTGAACCCTGATTATCAGTCAACTGACACTCTAAATACAACTGCTAACTACAGAGCAGTTGGACCAACTGCGGAAGCCACGAACACTGCTGCTGAGAGACGACGACAAGCTATCCAAGAGAGTAAGTTTCTTGGAGGTGATATGGAGCACACTCATCTTGTGAAAGGACTGGACTTTGCATTGTTGCAAAAGGTGCGTAGTGAAATTGCTGAGGATGAAGAAGAAGATGAAGAACTGAATGTAAAAAAAGCAAAATATAAACAGAAGGATAAGGAAGAAGAAGACAATGGTGACGAGATTGAATTTACTTCCAAATTAGGCCAAAAGGTATACAAAGCATTGTTTAGAAGTCGACCACCTGAGAGGAATGAACTTTTTCAACCAGGACGCATGGCCTATGTGTTTGATGTGGAAGATGAGTATGCTGAAAGTGATATTCCTACAACCCTTATCAGAAGTAAAGCAGATTGTCCTGGAATTGAGACACAAGCCACTTTAACGACAAATGACATAGTCATCAACAAACTGACTCAGATTTTACTCTACCTGAGGCAAGGCACAAGGGCAGGAAAGAAGATCAAGAAGAAGGATAGAGGAAAAGAAAAGGAGAAGAATGAAAAGCAATCTGGACAGAAAGTGCGTCCAACTGGCGCTGATGACAGTATCTTTGGGGATGTTGGTGAGTATGATCCAACTGAGACTACAAAGGAATACGAAAAGAAATCTCGTACCAAGGAAAAGGAAAGAGAAAGGGACCGGAAGAAATCCAGAAATTCATCAAGTTACTTTGATAAATCTGCTGGTGGAGAAGATGATGCACAGTTTAATAAGAAAGATGTTTCAGCTGAGGAGTTTGCAAAGTCTGTTGCACAAACATTCGGGAAAAAGCATGAAATGGAAGAGAGGGCAGCGTGGGACTCAGTTGATCCAAAGTATCCTTCTACAGTGGCAGTTGATGTGCCATATGATAGTGATGAGGAAGCGGACTACAGTAAGATGGATCTGGGCAACAAGAAAGGTCCCATCAAGCGTTGGGATTTTGAAACAGAAGAGGACTACCACAGTTACATGGAAAGCAGAGAAGCACTTCCAAAAGCTGCCTTTCAGTTTGGAATCAAGATGTCTGAAGGACGGAAAACACGCCGTGCAGGGCCCAAGGATGAGAAGGCTAAGCTAGACAGAGACTGGCAGAAAATTAGTAAGATGTTGAGCAAGAGAAAAGAGGAAGGTGGTGGAGACAGGGGAGAGTCCGAAAGCAAGAGAAGGAAACATTGA

Transcript

ANN13204-RA

Protein

Uniprot

Uniprot term	Description
Q9Z1M8	Protein Red OS=Mus musculus OX=10090 GN=Ik PE=1 SV=2
Q66HG8	Protein Red OS=Rattus norvegicus OX=10116 GN=Ik PE=1 SV=1
Q5NVI3	Protein Red OS=Pongo abelii OX=9601 GN=IK PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07807	RED_C	RED-like protein C-terminal region	Family	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF07808	RED_N	RED-like protein N-terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012492	Domain	Protein RED, C-terminal	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR039896	Family	Protein Red-like	Interproscan
IPR012916	Domain	RED-like, N-terminal	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12765	RED PROTEIN IK FACTOR CYTOKINE IK	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14856	SDA1, SDAD1; protein SDA1	-	Ribosome biogenesis	ko03009	deepkoala