Gene detail

Detailed information of ANN13222-RA in Leptoseris scabra

Genomic Location: Scaffold_7__1_contigs__length_55811456:13789750...13809291
NR annotation: CAB4029885.1, Hypothetical predicted protein [Paramuricea clavata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN13222-RA

ATGGCCGGGTTTCGTACGCAGTACACACGATTGAACTCAAATTCAGATGATCCTGAAGAGGACTTACCTCCACAGGGCTTTGATATTGGTGCTCGCGGATTCGAAGAAATTGAGAAAGGTCACTGGAATCACATAGAAAATCTTGATGAGTTCTTCATTCGGATATCCTTTCCAGATTCTCTTGATCCGTGGTTTGATGAACCCACCCCAAGGGAAATGCCAATTTTTTCTAAATCGGTAACTATGAACCAGGAGACCACATGTGATATACCATTTGAAAGCCAATTTGTGTTTGTAGTTCTCTTTACGTCATTCTTGGTCCTATGTGTGGATTATGACACTTTATTTAATCACAAGACCCCTACATTCTCTAATGTAGTGCATTTCCACAAAGTACAACATATGGAGCCTGCCATAGCTGTTTGTCTTATCATTGCTTTTATCTTTTGGCTGATTCGTTTGGCAAGAATTGTGATCCATTTCTTCAAGCTTTTAGAAATACGGGCATTTTATAAAACTGCACTGAGAATATCAGAGAATGAACTTACCAACCTACAGTGGCAGGATGTTCAAAAGCGATTAATAGAAGTACAGCAGGTTCATCAAATGTGTGTACATAAAGAAGAGTTAACAGAACTTGATATCCATCACCGCATTTTAAGATGGAAGAACTACATGCTGGCAATGCAAAACAAGTCAGTCATTTCTTGTTCTTACAACTTTCCACTTGTGGGCCAGAGGGCATTTTTAACAGAAGGAATGAAGTACAACCTAAAACTGATTCTATTCTGGGGACCAGGAAGTCCTTTTCAGAACAACTGGAAACTAAGAGAAGAGTACAGGAATCCAGCTAACAGGTTAGTTTTACACATTTTATTTGTGTTGGCACAAAGCTCACTTTTAACCATTCGAAATTGCTGGAAAGTTTGGAATAAGTTGGGTCACACCTCGCCAACAAAGCAGTTTTCAAACGATGTTTGGACAAGGCTGAAAGCTCTGGATTTGTTAGCGCCAAGGAGAGGTCAACGAGGAGGAAAAAGTTTAAACCCGCCAAAGAATGGAAAGAATATAAACATTGTTGTTGGAAGACGTTGCTTTCAGACATCGAATTCTCAATTATTTGGTCGAAGTAATTCAAGCAATGTAATTACCATATTACCAACGGCGACTTTGAATAACAATAGCCGAAATCACAGGGGGACAGAGTCGATGCAAGTTCACACAACATCGGACCAGGCAGCGTCACGAAACATTACGCAAAGCCCTCAGGTGAAGAACAACTTCCAGAAGTCGAAAGTTTGTGTGGCTCATTTAAATGTGCGATCAATTAAGGAAAGAAGCCATCTATTGCAAGTGAGGAATTTAATGAGCGAGAACGAGTACGGAATTTTGGCAGTTTCAGAATCTTGGCTTAACTCTTCGGTTACTAATGCTGAAGTGGAGGTCGAGGGCTATAAATTGATAAGGCTTGATCGGCCAAGACATAATGCTGGTGGTGTTTGTGCTTTTGTGCGTAGATCTCTAAAAGTCAAAGCGCTTAATGACCTTTCTGGCGTTTCAGACTCTGGTTTTCATCAATTATGGATACAGGTCCAACACAAGAAATTGAAGTCATTCCTGTTGTGCGTCACTTATAGACCACCTGACTGTCCACTCTCTTGTTTTGTTGACGACTTTATGGACCGTTACATGCAAGCTCTCACTTATGGCAAGCCGATTTTGGTGGTTGGAGATTTAAATTGCAATTTGCTGACCAGTTCTTATGAATCGAGAGCTTTGAAAGATTTGCATCATAGTCTGAACATGGGGCAGCTTATAACGGAGCCCACTAGAGTAACCCCAGCATCGCAGTCTTTAATTGACGTCATAATGACTCCCAACTCAGCGTTGGTCACGGACAGTGGTGTAGTCAAGACACGTATCAGTGATCATTATTTGGTTTATGCGGTACTCAATTTAAAGATGCCAAAACCCCCGCCCAGCTTTGTGATCGCAAGATGCTATAAGAACTATGACCCAGAGAGGTTTACCGAAGACCTTTCCAGGATTCCGTGGTATGAAAATGCTCTGATCGATGATGCCAATGAGAAAGTAGAACACTTTAACAATACCTTCTTTGGAGTCCTGGAACGTCATGCACCCGTTAAGAAAAAGAAAGTCAGAAAACGGCATTGTCCGTTTATAGATCAACAAATTAAAGAGCTGATGGAAGAAAGAGACCTATCACATAGAGTTGCCTGTGAGTCGGGTGTGGTGGCAGACTGGGATCATTACCTTTGGTATCGAAACGAAGTTAAGAGACAGCTACGGAATGCTGAGAAAAAACATGTTCAACATGAGATGAGCAGCAGTCAAAGTGTCCGTGCTAAATGGAAAGTGATACGAAACTGTATTCCATCTAAGGAGAGATCACGACCAGTGTACTCAAGGAATATGAAGGAACTAGCTAATGAATTTAACGAATTCTTTATCTCAGTGGGGGCTCGTGCTGCAGATGAATCAAAGAGGCTGGCTACAGTCAACAACCTCCCGGCATATGAGCCCCCTTCAACTTCAACTAACTTCATACTTGACTCAGATGAATTTCGATTTCGCGCAGTCACGACCGTGGAAGTGCGAAAGATTATTTGGTCCTGTCCTTCAAATAAGGCTCCAGGAAAAGACAAGCTACACATGAAGGTGATCAAAGATGCACTACCAGTCATACTCCCTGTCTTGACAGAGCTAATAAATACATCGCTATTGACTTCTGTGTTCCCAACGTCTTGGAAAGAGTCTGAGGTGGTACCATTACTAAAGGAGGGAGATCATGACACGCCCAATAACAACAGACCCGTATCGCTGCTACCTGCTCTCTCTAAGATCTGTGAGCGAGCGGCTTTAAATCAGCTGATGGAGTACCTGACACGTCGAAACTGCTTGACAGAACACCAGCACGGGAACAAGAAGCAACATTCCACCGAAACACTTAATATTTTCATGAGTGATATGGCTTTTGAAGCTATCGATCGAAAACAGATCACAGCGCTAGTGCTACTGGACCTCTCAAAGGCATTTGATAGTATCGATCACGAGATCTTGTTAAGTAAACTTCGAGTATTGGGTGTTTCTAGAGAGGCTATTGAATGGTTTAGGAGCTATTTGTCAGACAGAGCTCAACGTGTACGAATTGGCCACGAAGTGTCGGATCTCAGGGAGGTAGTACATGGTGTGCCTCAGGGGTCGATCTTGGGACCGGCGCTTTTCAACATCTACATAAACGATCTTCCAAGCGTCCCCAACATTTGCTCCCTGAAGAGTTATGTCGATGATTCGCAGTTATATTTTTCTTTTCGAGTTCAAGAGACAGAGGTGGCTAAGGTGCATTTGATCGAAGATCTACAAAGGATTGCGGCCTGGTGCTGTGCGCATAGTCTCTTGATTAACCCGGACAAGACGAAGTTGTTGCTGCTCGGGACTCCTCAGATGCTGGCTCGCGTACCAGAGGGATTTGCTGTTTCCTTACTTGGCAAAGAGATATCACCATCCCTTTCTGCCAAAAGTCTGGGGCTTGTTCTGGATTCACATCTAAGTTTCGATGAACATGTCACTGACTTAGTATCCAAATGTACAGGTAGCTTGTGTCAATTAAATCGTGTCAAGCACTTATTTGACAGATCAACGCTGATAACAATCATAAATGCTTTGGTGTTTAGTAAGCTGCTCTACTGTTCGTCTGTGTGGGCGGGTGCGACCAAGAAAAATATCGAAAGGTTGCAAAAGTTGATTTTGAAAGGAAAGGTCCATGCATTCTTTGAAAACATCAGTGGAACATTCCGAACATCGGATGTTGCAAAGATCGCAAACTTGAGAGCACTCCACAAGTTTGATGTATTGCGGAGATCTGTGCTTGTTTCAAAGCCAGAGATGGTAAAAAGAGAGCCTGATTCTTTTGGAGCGCGCAGATGGTCGTCCTATGGCAGGATGTTTTTTCGGCATTTTAATGAGTTGGACCACGAGCTTAATAAAAGATTAAGTAAAGCGTACGAACCAGCTTCTAAGTATATGAATCTGTTCGTATCTCCTTTTATGGCCATCATAGCCAAAAACATGGCGTTTTTCGCTGGTGCGCTTTTTGCTGTCCTAACGATCTTCACGCTTCTAGACAAGGATGTTCTGCTAGCTGAACATGTGCTAACTGTGATAGCAATTTTAGGTTTAATTATACGAGCATGTTACATTTTTATACCAGACGAGAACTCAGTGTGGGATCCTGAGCAACTGTTGAAGCAGATTGTATCTCATACTCATTACATTCCTGACGCGTGGAAAGGAAAAGCTCATACCAAAGAGGTTCGAGAAAAGTTTTCTCAAGTCTTCCAGTACAAAATGGAATACGTGGTTCAGGAGTTGGTCAGCCCCATAATCACCCCGTTCCTTTTGTGTTTCAATTTGCGCTACAAATCTCTGGATATCGTGGATTTCTTCAGAAACTTCACCGTTGATGTTGTTGGTGTTGGCGATGTTTGTTCGTTTGCGCAGATGGACGTCAAAAGACACGGAAACCCAGAGTGGCTGAGTGAAGGCCTCACGGAAGCAACTCAATATGAACAAGCTGAACATGGTAAAACAGAACTTTCTCTCGTTCATTTCTCGATAAGAAATCCTACGTGGAAGCCGACAGATCGAGGCGCTCAGTTTATCAGCACAATCAAGGAAAATGCTGTCCAAGAAGGCATTAACTTGAGCACCAGCGCTGCTTTGTCTGAACCAAATTCCCTTCCAGATTATAGAACAGGCAGTTTTCAAGGCTTGCCTTATATGAATCCCATGAGCCTCAGCGATCCATCTCTTACTCCTCTGGGAAGTACCTCTGGAACACCACAACAGCAGGCTCAAGCTCGAGAAATGCTGATGAACTCAAGCATGTTGTACTTGCACGAGGTATGTTGA

Transcript

ANN13222-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3T904	Autophagy-related protein 9A OS=Bos taurus OX=9913 GN=ATG9A PE=2 SV=1
Q7Z3C6	Autophagy-related protein 9A OS=Homo sapiens OX=9606 GN=ATG9A PE=1 SV=3
Q5RCS0	Autophagy-related protein 9A OS=Pongo abelii OX=9601 GN=ATG9A PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004354 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04109 all species →	ATG9	Autophagy protein ATG9	Family	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF03372 all species →	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR007241 all species →	Family	Autophagy-related protein 9	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13038 all species →	APG9 AUTOPHAGY 9	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000407 all species →	Cellular Component	phagophore assembly site	Interproscan
GO:0000422 all species →	Biological Process	autophagy of mitochondrion	Interproscan
GO:0005776 all species →	Cellular Component	autophagosome	Interproscan
GO:0006914 all species →	Biological Process	autophagy	Interproscan
GO:0034497 all species →	Biological Process	protein localization to phagophore assembly site	Interproscan
GO:0044805 all species →	Biological Process	obsolete late nucleophagy	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN13222-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.