Gene detail

Detailed information of ANN13310-RA in Leptoseris scabra

Genomic Location: Scaffold_7__1_contigs__length_55811456:15293748...15303386
NR annotation: CAH3182667.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN13310-RA

ATGGAAGAATCCAAACCTGAGATAAATTCCGTGAATCGCGCCCATGATCAAGAAACCCAAACAACTTTTGATATAAACCACAGGGAACCACCGGTTCACAGGACTCTTTCAACTGATGGGGGCAGACGAGCTCATGGCTATAATACATATAACCACCACAGACATGGACCATCGTGGGGTGCAAACTACTCTTTTCATACACCAGCCTATCCCGAGTACTACCCTTACGACATGCACTACCCACCACCACACCACCACCCCCCTCCATCCATCCCAGCACCTCCACCCCATGGTAACCATTACTATCCTGGCCGTGCACCACACTGGCATAATTCCCCCAGCCCTGTACTACCACCACACTTATCCCCTGTTCCACCTTCCCATTCTCCTTATCGTCATTATCAATATCCCCACCCAGATGGGTTTTATTCCCACCCTCCGCCATTACATGGAGTTGCTCCTCCTATGCCCATTTCTCGTGAGAGAAGACACACTGACTCAGAGATTGCTCGCCCCAAGGCAGAATGGCCACCTGGATATCAGCCCTTTGCAAAACCTACCATACCAGCAGATTATCTGGCCACTCTACATCGCAACCCAGGATCAGACTATGGTGGACCACCATCCACAGCAACATCCTTGAGGTCAACAGTTATAGATCTACCACATTCCAGCTTTCCAAGCCCAAGGCTATCAGCAAGAATGAGTCGGAAGCGGCCACTATCCAATACCCCTTCATCTGTTGAGTCCATTGACCTGAATGCTCTGATAAGGGGCTCACCAGATTCCCTATCTGGGTACCTTGGGCCAACAAGGGTGTCCTCAGCAGGGTCCTTTGGTCACTTGAGCCCCATTGGATTTTGCACATCTCCTGGTTCACGACAGACACCACGCTATCCGATCGCTAGAAATGTGCTCATTACAACTCCACCTATTGCCCTTCCCCGATTACCAACACCATCTTCCACAAGAGACACAGTGCCCAGCTCAACAACTGGTGCAGAAGGGACAAAGGAGGAAACTCAAGAGGACATGAGTTGTTCTGAGTCACCGCAAGTGTCAAGTAATAAAGAAACAGAGAGTGTTAGCTGTAAGGATGAGAGTATGGACATCTGTCCTCTAGACTCTACAACATCACCTGGTGCTTCAGAAATAAAGCAGGAAGGTTCAGATAATGAGCCAGAAGACAATCAGCCTGAGCAGCAGGAAGAGCGTGACCTGGCTTGTCACTGGAAAGAATGCAAGATACAGTGTGAAACACAAGATGAGCTAGTTAAACATGTCAACAATGATCACATCAAAAAGGATCGCAAAGACTTCACCTGTTACTGGGATGCCTGCACCAGAGAAAGGAAGCCTTTTAAAGCCCAGTATATGCTAGTTGTGCATATGCGCCGACACACTGGAGAAAAACCACATAAATGCAATTATGTTGGCTGCACTAAAGCTTACTCCAGACTTGAGAACCTCAAGACCCATCTCAGATCACATACAGGAGAGCGACCATATGTGTGTGAGGTAGAAGGCTGCAATAAGGCATTCTCTAATGCATCAGACAGAGCCAAGCACCAAAATAGGACACATTCTTCTGTGAAACCTTATGTTTGTAAAGTACCAGGATGCACCAAACGATACACAGACCCTAGCTCACTGAGAAAACACACCAAGACAGTCCATGGAGAACAGGCAATCAAGAGGCTAAAAGCAGAAGGAAGCAGAGAGAAGCCACCATCAAATCCTGACAACAAGGGGAATGTATCCTCAGAGAAGGGACAAGGCCAACATGTATCCAACACTTCACAATCTGTACAATCACCATCCAGTGCTGTGACCAATCAGCTTCAAGAGCCTATGTCTCCAGGAAGAGATAGTTCCAGCACTGTGGGAAGTATCGTCCAAAGTGGAAGTTTCTCACAGACTTTTGTAGGTAGCAGTTATGAGGTGGATACAGTTTCTTCAAGTTGTGATAGAACCTCAGGAGCGCTTGATATTCCTTTAAACCAAGACAGTCCTAGAAGTGTTGGCCAGTCCACACTAGGTTTATCCCCAAGAAGTCCTCCATTTGTCAACCATCTTCCTGATATTTTGGAAGGAGAATGGGAGACTGCTGAAAGTGGTAATGTCACAACAGCTCAGTCCGTTGAGGCTAGACCACAACCCCAGAGTGTCACTCTCCCAAAGATTGATGGTCGCAAAAGGGATGTGGCATTATGGGTGAATGATGTTCACCGTCGAATGAGCCAGTCATCACGCAGATCAAGTGAAGGCAGCCATTTATCTGTGGAGCTCAATGGTGATGCAAGCAGAAGGTCAAGCCAGGAAAGTGGTTGGTCTTCTTATGGAAGCCGTCGATCCAGCCGTGCAAGTCCATTCCCATCCACAAACATTCAGCCCCAAGAAGTCATTCCTCACTATCCCAACAATGGATCTGTTCTTCCAGTTCCAGCAGGGATTGCCACGCACTGTCGACCACCACACATACATCCTCTTGATACCAGTGATGACCCTCTACGCAGAACAAGTGAAACCAGCACATGCAGCAACCAAAGTGCACCTTATAATAGGTTGAGCCGTAATAGTAGTGGATATGGAAGCCAGTCAAACTTGGCAGTTATTAGAAGTCCTATGTTTCACAAGATCCCACCATCATCCTACTTGTTACCACAGCCACCTATGCGCAGTGATGCTTCCAGCAGGAGAAAAAGCGACACAGTCATCTGCGAGGCTGATAGTTCAGGAAGCTACCTCCCGAATAGTGGCAAGGGAGAGGTGCGCCGTAGTAGTGAACCTGTTAGACAAGCAAGGGCACCCTTAATGAGGCTTGAACCATCAAGTGGGCCTGCTAACAGAGAAGCAACACCTATGCCAAATTTAAATGAGACAGAACTGATGTATGGTGATGTAGATCCACAAGAGTTTGATGCCTACCTAAATCCCCAGGGGGAGGTACAGGTAGAATCAACTGTCCTACACCCTCCCTCAGGGAATAAATCCAGTTCACCTCCACCTCCACAGCAGACACAAAGATTGTGTCACTACCCATATCCTGAGGAACAACAGGCAGTGCAGCAATCACAGTCACACCAACCTAGTTTACAGACTGTGCATCATCGACCCCAGCCACTCTTCCCACCACAAGAAAACCCTTCAATTCCAAGTCATGAACATCAAACAGTTATCCCGAATGAAAAGCTGTCACCCTCAGCGACAAATGGACCGCATGTTACAAGAAATCCTCAAGATGGGTACTGGGGTCCACCTCGGTGTAGAACTGTGCAACAGCATAATCCACCTGATATGCAAACTGTTCTCTACCCCTCAATGTCTGAAAATGGTGCATATGACTTTTCAGTGGAGGCACCAGGACAGAAAAACTATTCCAACATGGAAAATTATGAGGATGCAATGGTTGCAGGGCTTGGCTTACTATCAACTGACAATGGTGGGGTGTCAGAGTTTGTTGGAAATGGTAACATGGTGGTGAATGACATGAACACATTGCTGAATTCGCTTCGTGAGGAGGAACGATACCTTGAGATGTGTCAATCAAGAGGGGTGACGGGAAGTGCCATGTCTATTTTTTAA

Transcript

ANN13310-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P55878	Zinc finger protein GLI1 (Fragment) OS=Gallus gallus OX=9031 GN=GLI1 PE=2 SV=1
Q5IS56	Transcriptional activator GLI3 OS=Pan troglodytes OX=9598 GN=GLI3 PE=2 SV=1
Q9IA31	Transcriptional activator GLI3 (Fragment) OS=Gallus gallus OX=9031 GN=GLI3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007643 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR043359 all species →	Family	C2H2-type zinc-finger protein GLI-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45718 all species →	TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN13310-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.