Gene detail

Detailed information of ANN13363-RA in Leptoseris scabra

Genomic Location: Scaffold_7__1_contigs__length_55811456:16456145...16461431
NR annotation: XP_020601571.1, DNA polymerase iota-like [Orbicella faveolata]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN13363-RA

ATGGAGAAAGAAATAGGTTTGAGTGAATTTAGATCATCTTACGGCAACACACATGAGGAAGAAGAAGTATCCGACGATGAAGAATGGCAAACTACACGCCCCTCCACCAGTAACTATAGCTGGCAGTCAGCCATGTTTCCACCAGCAAAGAAACGGCGAATTGACTCTTCATTGTCGAATCCAAAACTGCAAAGTATAATCCTTGCGAAGAAGCCTTCAATGCAACCCGATTCTTGTTTGGGGCACAGCAGAACTATAATTCATGTGGACATTGACTGTTTTTATGCTCAAGTGGAGATGATACGAAATCCAGAACTATGTAATCTACCCCTGGGAATTCAACAAAAACATATTGTAGTAACATGCAATTATGTCGCTAGAAAACGTGGAATAAAGAAACTCTCCTATATAAGCGATGCAAAGAAGAAGTGCCCAGACCTTGTGCTCGTTAATGGCGAGGATCTGACAGTGTATCGAGAATTTTCAGGGAAAGTACACTCACTTCTGACCCGGGACTTCACGCCTCTGGTGGAAAAACTAGGCATGGATGAGAATTTTTTGGATGTCACCGAACTTGTGACTTCACGGCTGGAAAGCACCCCTCTTGAGAGCACCAATTTTTCTGGTGCTGTGTACAGTAGGAGTTCAGATTCTAATGAGATGAAGGCTGTGAGTTCTTGTCGCTGTGGTTGCCACGAGAGGCTGAAAATTGGGTCTCTGATTGCAGCAGAAGTCAGGAGGGCAATTCTAGAAGAAACTGGGCTCACATGCTGTGCTGGAATCTCTCACAATAAACTCCTTGCTAAGCTTGTTGGTGGGTGGAAGAAACCAAACATGCAGACAACGCTGCTCCCTGAAGATGCCGAGAGCCTCTTATCTGGACTTCAAGCAAGAGATATCCCAGGTATTGGGCACAGTATGGCAAAAAAACTCCGGACAATTAATGTCTTGTCAGTTACTGACCTGCTCTCCTGTCCCAGCCAAGTCCTCGAAAAGGAATGTGGCAACTTGCAAGCAACCTTGATGACTAAGTTATGTCAAGGCATTGATGACAGCACAATTACCCCTTCTGGTGAATTTAAGACCATTACTGATGAGGATTCTTTTAAGAAATGCTCAACTCTTGACAATGCAAGGAAGCGACTTGTTGACCTCATTGAAGGACTACTGCCGCGAATTTCAAGTGATATTGGCATACCTCAAACTGTGAGAGTTACAGTGAGAAGGCAAGCGGAGAACTCTACTTACAAAAGGGAGAGTCGTCAGTGCAGATTGCAACATATTATTTCTTACGATGACAAAGACAAAGCAAGAGTCACTCTCTTAACAACCTGCTTACAGTTGTTTAATAAGCTTGTTGATGTCAAGAAACCATTTCACTTGACTCTGCTGGGAGTGTCACTGTCAAACTTTCACAAATCTCCTACCACACAATCAAAGGACATCTCTAATTTCTTTCAGAAGTCATTTCCTAAACACAAAGATCCAGCATCTTTTGTCAACAGTCTCTTAAAAAACAGTGATAGTGGGAAGGTTGAGTTGTGTAGATCCCTCGTGAATACAAATGAAGCTACTCTCTCTGTATGTGGGGGCCAGGAACCACAGGGATCCTCAGAACTGAATACACAGGATACCCAGGAAAAGGAACTGCAGGAACAATCAAGACTGGATACCCAGGATACCCAGGAAAAGGAACCACAGGGACACTCAGAACTGAATACACAGGACACCCAGGCAAGTGAAACATCTATGATGACATTACAGAAGCCTGTTGTTTGTCCCAAAGGTATAGATCCTGTAGTATTTGCTGAGCTTCCACCTGATATACAAAGAGAGTTAGAAACACAATGGCAACAAGACACAAGAATGCCAACGAAAAACACTGTTAAGACTGACAAGGTGATGCAAAAGCCAAAAGGAAATTCTGGAATACAGAGGTATTTTGCTAAAGAACAAGCCAAACAGTCAGGCTTCAGTAAGTTCATGTGA

Transcript

ANN13363-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UNA4	DNA polymerase iota OS=Homo sapiens OX=9606 GN=POLI PE=1 SV=3
Q6R3M4	DNA polymerase iota OS=Mus musculus OX=10090 GN=Poli PE=1 SV=1
Q9VHV1	DNA polymerase iota OS=Drosophila melanogaster OX=7227 GN=PolI PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010236 (this species only)
Ubiquitin family	UBD\|Alpha-Helix\|UBM · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00817 all species →	IMS	impB/mucB/samB family	Family	Interproscan
PF11799 all species →	IMS_C	impB/mucB/samB family C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001126 all species →	Domain	UmuC domain	Interproscan
IPR036775 all species →	Homologous_superfamily	DNA polymerase, Y-family, little finger domain superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR017961 all species →	Domain	DNA polymerase, Y-family, little finger domain	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46404 all species →	DNA POLYMERASE IOTA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0003887 all species →	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0019985 all species →	Biological Process	translesion synthesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03510	POLI; DNA polymerase iota	EC:2.7.7.7	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.