Genomic Location: Scaffold_7__1_contigs__length_55811456:16611296...16613794
NR annotation: CAH3174643.1, unnamed protein product, partial [Porites evermanni]
Species Leptoseris scabra · all data for this species · gene families
| CDS |
| ANN13374-RA |
| Transcript |
| ANN13374-RA |
| Protein |
| ANN13374-RA |
| UniProt accession | Description |
|---|---|
| Q5DC69 | 10 kDa heat shock protein, mitochondrial OS=Schistosoma japonicum OX=6182 GN=SJCHGC01960 PE=3 SV=2 |
| Q64433 | 10 kDa heat shock protein, mitochondrial OS=Mus musculus OX=10090 GN=Hspe1 PE=1 SV=2 |
| P61603 | 10 kDa heat shock protein, mitochondrial OS=Bos taurus OX=9913 GN=HSPE1 PE=3 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007364 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00166 all species → | Cpn10 | Chaperonin 10 Kd subunit | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR020818 all species → | Family | GroES chaperonin family | Interproscan |
| IPR037124 all species → | Homologous_superfamily | GroES chaperonin superfamily | Interproscan |
| IPR011032 all species → | Homologous_superfamily | GroES-like superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10772 all species → | 10 KDA HEAT SHOCK PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0006457 all species → | Biological Process | protein folding | Interproscan |
| GO:0044183 all species → | Molecular Function | protein folding chaperone | Interproscan |
| GO:0005759 all species → | Cellular Component | mitochondrial matrix | Interproscan |
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
| GO:0051082 all species → | Molecular Function | unfolded protein binding | Interproscan |
| GO:0051085 all species → | Biological Process | chaperone cofactor-dependent protein refolding | Interproscan |
| GO:0051087 all species → | Molecular Function | protein-folding chaperone binding | Interproscan |
ANN13374-RA.Genes whose expression across the transcriptome samples of Leptoseris scabra tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Leptoseris scabra, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
