Gene detail

Detailed information of ANN13409-RA in Leptoseris scabra

Genomic Location: Scaffold_7__1_contigs__length_55811456:17233056...17238356
NR annotation: KAJ7372212.1, ATP synthase subunit beta, mitochondrial [Desmophyllum pertusum]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN13409-RA

ATGGTCACCGGCGCTGCACAACCATTCTTCTCCGCCATGTTGGTTCATGGTTTACGGCGTGCGGCAAGAACCGCCTTTAGACCTAACCTTGTAGCTCGTACATTAAGACAAACACAACCGAGAACACTTCCGATATGTTCACAACTATATAATCGCCGTTATGTTTCAACCGACAAACCTGTCTCTGCCGCAGCCGCCGCTCAGGCAGCCGCCCCCAAAACAACGTCTTCACCTCCTGCAACAAAGCCGGGAGCAGTTGGTAAAATTATCGCTGTTATTGGTGCCGTTGTAGATGTTCAATTTGAGGAGGGTCTCCCTCCCATATTGAATTCGCTCGAGGTGGAAGGTCGAACACCTAGACTCATTCTTGAAGTCGCTCAGCATTTAGGTGAGAACACAGTACGAACCATTGCTATGGATGGTACAGAAGGTCTTGTAAGAGGCCAAAAGTGCACGGACACCGGAGGTCCTATCACAATTCCTGTTGGCCCTGAAACATTAGGAAGAATTATCAACGTTATTGGAGAAACCATTGATGAGAGGGGACCTATTGGCACAGACAAGCGATCTGCCATCCATGCTGAAGCTCCTGAATTTGTTGAAATGAGCACCGAACAGGAGATTCTAGTCACAGGAATCAAAGTTGTGGACCTTCTTGCACCATACGCAAAGGGAGGAAAGATTGGACTGTTTGGAGGTGCTGGTGTGGGCAAGACTGTTCTTATCATGGAGTTGATCAACAATGTAGCTAAAGCTCACGGTGGTTATTCAGTGTTTGCTGGTGTTGGAGAAAGAACACGTGAAGGAAATGACTTGTACCACGAAATGATTGTGTCAGGTGTCATTAGCTTGAAAGACAAGAGTTCAAAGGTGGCCCTAGTGTATGGTCAGATGAATGAGCCCCCAGGCGCCCGTGCTCGTGTAGCCTTGACTGGTCTGACTGTTGCCGAGTACTTCCGTGATGAAGAGGGACAAGATGTGTTACTTTTCATTGACAACATCTTCCGTTTCACTCAAGCTGGTTCCGAGGTGTCTGCATTGTTGGGACGTATTCCATCTGCTGTGGGTTACCAGCCTACTCTAGCCACTGATATGGGTACCATGCAGGAAAGGATTACCACAACAAGAAAGGGATCTATCACATCAGTACAGTGCTACTGCTCAAAGGGAAGATCGAGTGGGATGTTTTCAATCAACCAGCAAGGACGAAATTATCAGAAAGGCGTCCCACTTTCAAGCGATTTACGTAATCAAGTGAAAGAACTTGCGCAGGATTATTCTTTTTCAGAAGTTGGGCAGAGATTACGCATCAGCAAAGGTGCAGTTTCAAAAATCGTTAAGCAGTATATCGTGACTGGAAGCACGGCTCCCGAACAGTCGAATCACGTTCGAACAGTTCCTAGGTGTACTTTCCAAGACTCTATTCTGTTGGAGACCATGGTGCAAGCAAGTGGTTCGTCCTCTCTTAAAGAACTGCGCGATGATTTGGCCATTCACGGTGACTGCGGAGAACTGTCAACATCAACAATTTCCAGAAATATCAGGTACAAACTTCCAAGTGGCCGCAACTATTCCCGAAAACGATTGGGGAAATGTGCGTCAGAGCGTTTTACTCCCGAAAATATAGTGTACACTCAGTTGTACATTGACTATTTAAAAGATAAAGATCCTTCCTCTGTTAAGTTTTTCGATGAGTCAGGTTTTCAACTGCCTGATGCTGGTCACAGAAACGTTGGTTTCTCACCTGTCGGTGAAGATTGCGTAGAAGCGCGAAGATACTTGTCTACCGCAAACCTCACCCTGAACTTTCTGGTTGGTTATGATGGAGTAAAATATGGAAACATCATAGAAGGAGCGTCGAACTCTGTACAGTTTTTACGATTCTTTGATGAGGCTTCGCAAACAGTTGATCCAATAACGCAAAGACCAATTCTCGAAGTTGGTGACATTGTCATGGTGGACAATCTAGCCGCGCATCATGGCGAAGCGGAAAGAGCACTGCGAAGCTTCCTAAATGATTTGGGAATGGAGCTTGTTTTCCTCCCAGTGTATTCACCAGATCTCAATCCTGTTGAGGAGGTGTTTTCGAAGCTGAAATATTTGCTAAAGTACAGATACCAGGAACTAGTGTGGGATAACCTGGAATACGCAGTGTTGAGAGCGGTCGGAGATGTAACAGCGGCCGACATGTACGGGTACTACAAGCATGTAGGATATTTGTTTTGA

Transcript

ANN13409-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q25117	ATP synthase subunit beta, mitochondrial OS=Hemicentrotus pulcherrimus OX=7650 PE=2 SV=1
Q5ZLC5	ATP synthase F(1) complex catalytic subunit beta, mitochondrial OS=Gallus gallus OX=9031 GN=ATP5F1B PE=1 SV=1
Q05825	ATP synthase subunit beta, mitochondrial OS=Drosophila melanogaster OX=7227 GN=ATPsynbeta PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003927 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00292 all species →	PAX	'Paired box' domain	Domain	Interproscan
PF13358 all species →	DDE_3	DDE superfamily endonuclease	Domain	Interproscan
PF00006 all species →	ATP-synt_ab	ATP synthase alpha/beta family, nucleotide-binding domain	Domain	Interproscan
PF02874 all species →	ATP-synt_ab_N	ATP synthase alpha/beta family, beta-barrel domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001523 all species →	Domain	Paired domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038717 all species →	Domain	Tc1-like transposase, DDE domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR036121 all species →	Homologous_superfamily	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily	Interproscan
IPR000194 all species →	Domain	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	Interproscan
IPR004100 all species →	Domain	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain	Interproscan
IPR050053 all species →	Family	ATPase alpha/beta chains	Interproscan
IPR005722 all species →	Family	ATP synthase, F1 complex, beta subunit	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15184 all species →	ATP SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0046034 all species →	Biological Process	ATP metabolic process	Interproscan
GO:1902600 all species →	Biological Process	proton transmembrane transport	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005753 all species →	Cellular Component	obsolete mitochondrial proton-transporting ATP synthase complex	Interproscan
GO:0042776 all species →	Biological Process	proton motive force-driven mitochondrial ATP synthesis	Interproscan
GO:0045261 all species →	Cellular Component	proton-transporting ATP synthase complex, catalytic core F(1)	Interproscan
GO:0046933 all species →	Molecular Function	proton-transporting ATP synthase activity, rotational mechanism	Interproscan
GO:0015986 all species →	Biological Process	proton motive force-driven ATP synthesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02133	ATPeF1B, ATP5B, ATP2; F-type H+-transporting ATPase subunit beta	EC:7.1.2.2	Diabetic cardiomyopathy	ko05415	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.