Gene detail

Detailed information of ANN13463-RA in Leptoseris scabra

Genomic Location: Scaffold_7__1_contigs__length_55811456:18300412...18316560
NR annotation: CAH3192646.1, unnamed protein product [Porites evermanni]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN13463-RA

ATGGGAAAAAACAAAAGAAAGAGGAAACTCAAGGAACAGGACTTTAAGAAGGTGAAATTAAAAGTTGGAAAGAAGTTACAACCTGCTCAGAATGCGACGGAGACTTCGTTCAAATCCAGAGCGATCTTCATTCCAACTCAGTTGAATAAAGACTTGGAGCCTACCAATCAAAGAAATCAAACTCTGAAGGATTTACTTGCTCAAGTTGGCCATTACAGTGTGACAACTAGACAGGAGGCACTTGTTGGCCTGAAAGATCTCTTCCAATGCCATCAAAATCTACTGCAAGAAAACCTAGGAATTGTTATCAAGAGAGTTGCTGAGAAAATGACGGACAGTGAGCCATCAGTGAGGCAGTCACTTCTTTTGTTTCTTTGCTTTATTTTCCCAATAGTACCACAAGAAAGGATGGCTCCATTTTCCTCACTGATTATAGCTCATTTGAGTTGTGCCATGACACACATTTATGATGACATTCAGCATGATTCTCTGGCCTTTCTGGAACTGTGTCTCCGTTACTTTCCAAATTTAATGGTGACGAGTTCCTCTCAGTTGATTCACAACTTTGTAGGTATGATTTCGCATCAGAGCACTTCGCATGTGAAAAAGTCAACAGGATTACAACTTAAAGTAGGAAAAGGACTTTCGGTGAACCCAAAAGGAAAGCTTTCTTCTCTCAGATCACGCTTAAAAGTTCTTCAGCAGATGCTGGCATTTTTGAAAGCTCTGGAATCTTCATCAAAACCTTGGCAAGAAGAAGGCATTTTCCCTTCAGTGAGCAATGTTGTATCAGTTACCAAACCCATCATCCAGTTTAACAAGCTCCAACCAACACAAGTTCAGGTGTTGCAACATTCCGTTGATGAACCAAAATTAATGCCCTTCACGTTTGAAAATGGCTCATCATCAGCAAGCACAGACAATGAGTCTAACATTTTTACTGATGAGAAGAAAATGAAGGACTATGAGGAGGTTATTGTGCCATTATTACTGGAATGCTGGATTGAGTGTAACCCTGCACAAATGATGACTGGTCTTCCTGATGGTGTTATGTCATCTTCGGCCACTGATGTAATGCTTGCCATAGCACAAATTCTCAAAGTCATCTTCAAAGCAGCACAGAGAAACCAAAAGAATTGTAGTTTCTCTGAACAAAGCTCCGAGTTAAAGTGCTTACAAGAAATACACTTGAAAGATTTCAACCAACACTTCATGAGTTACTTTCCATTTACAGCAAGTCACGTTCCATCTGTTAAAAAAGGGAAGCGAAAACTTGGAAAATCACCTCATCATTCTGAAGAAGAGAAAAATGGTTCTTCTGTGTTAGCACTGAACCTAACAATCTGTGAAATTATGCTCCAGTTTGTGAGAAATGATGAGACTTTCCCAAAGAATTTTGGACCTTCATTTGAGAAACTGGAAGAGTATGTTGTTGAATCTTTGGAGCTAAAGGCCAAAGGCGGAACCAAGGCTCAGTTGTTGCAGACAGAACATGTGGAGAGTTTAGTCACATTCGGATACAAGATTATTGTCCATCAATGCTCTTGGGGACAACAAGCACAAACCCCTGGCATGATAAAGGAACTACTGGACACAGCATTTAATTTGTACCAGTCAAGCCATACAATGTCAGGAACCAAGAGGGTGCTGATGTTGTTTTTTGCCGATCTTGTTTTCTCTGCAGATCCTAATGTGTCAAGACATGAAGTGGTGCATGGATTAGTAGAGAGGTGGTTACAAGGTTTGCCAAGTTTGTTGGTGCAGTTGAAAGACAACAACCTTGGCATGACTGAACTTGTTCTTGGCATCTTGAAGAAAGCTGTGATTCAGAGTGCTCTTAAGCCAGATGGAAACTTTGCTTCTCACCTGGTCACATTTTTCTCCAAGAGCAATGGCCCCTTTAGGAGTCTGAGTGAAGCTACTCAGAGATCAGCGATAGAGCTGCTGTTTTACCTTCCATCAATGGATGATAAATTGTTGCAAGTCATAGTGAGCTGTTGTCAAGATAGTCAAGTTAATGCGTCTGTTGTTCAGTACATCCTCCAAGTTCTCCATTACAGGTCACCATGTTACCAAGGATTTTTGTCTCTCCCAGCAGCATTTTCTCTTCCATTGTACCTTAGTGCTTTATTTAGCATAGCAATAGGATTTTCTAGACACGAGTTGACTGACTATCAGGATGCGGTGAAACAGGAGAAGACATATAAGCTTACTGAGTTCAAGAAATGCAGTTTTATCATCCTGGAAGAAACTGCACAGGCTGAACAAAGTGTAGCCCAGTTATCTACACTACAACAAGGTGGTACACTCAAGTTTTGGGAGGACCATCAAAAGAAATTGCAGGCAGTTTGCCAGTGCTACAGGCAAAGTAGCCAGTCCAAGCTTCTCCTACAATACATGGGTTCAGCGTTGGAAACGTTTCTGGAAGACTTCAAAGTTCTACCTTTGCCTGCAGTACACAGCCTTTTGTGCACAGTAAACTGCTTCTTGGAATTAGCTTCAGCCTCGGAATCTACAGCCAGCAGTCACCGTTTATCAGCTCAAGTACAGTCAAACCTCGCCAAACTGTCGCTAGTTTGTTTAAAACACTGTACAACTCTTGAATCGTACACCGAAGATTTAGCCAGTGATGCTTTGGATGTGAAGAGGCACTTGTTTGACGCAGTTGTAGAGTTGCTTCTCGCCCCGCCGGCAATCGTCACGGATGTGCTATCGCTTTTGTTAAACATTCTTTCAGACAACTCACTGGAGTCTTTAAGGCAGGACTGTGCCGCTATACTCACCAAGGTTTTCTGTTGTCAAGTGAGAAAGATTCTGCTTCAGTCGCCAGACGTTGTGCGGCTTGTTGTGTTTCGCATCTTGTGCCCAGAGGATCCATTATCTTGTCAGAAGCAATGCTTCGCTGATCTTCAATATCAGTTTTCCTTGTTTAAAGTTGAAGCCGGCATAAGTTGA

Transcript

ANN13463-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3URQ0	Testis-expressed protein 10 OS=Mus musculus OX=10090 GN=Tex10 PE=1 SV=1
Q9NXF1	Testis-expressed protein 10 OS=Homo sapiens OX=9606 GN=TEX10 PE=1 SV=2
Q5RDK1	Testis-expressed protein 10 OS=Pongo abelii OX=9601 GN=TEX10 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004262 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12333 all species →	Ipi1_N	Rix1 complex component involved in 60S ribosome maturation	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR024679 all species →	Domain	Pre-rRNA-processing protein Ipi1, N-terminal	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16056 all species →	REGULATOR OF MICROTUBULE DYNAMICS PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0071339 all species →	Cellular Component	MLL1 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14827	IPI1, TEX10; pre-rRNA-processing protein IPI1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.