Gene detail

Detailed information of ANN13493-RA in Leptoseris scabra

Genomic Location: Scaffold_7__1_contigs__length_55811456:19143426...19183875
NR annotation: CAH3171894.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN13493-RA

ATGGTGGATGATCTTTTGAGCTCTGATGGCATTTCAAGGGAATATTTGGTGATTTTGAAGCAGATTGAAGATTACTGTAGTCGGGGACCAGAAATAGATTTGGATATTCAAGGGATCACAAACGGATCATCAAGGTTGAATGGTGAAGTAGAGACAGATGGGGCTAAGCTGTCCACGGCTGCACCGTCCAGAGCTGGGTCAACAAAAAAGACCATGCCCACAAGAAAAATCAGTGGAACAAAAGCTTCAGGCTCTTCGTCTAACTCAGCTTCAGCAGGTGCAGTGGATGAATCAGATTTTGAAAATGCATTTTTCGATTGCCCTGATGTTAAGATTTACAACGCAAGGGACCTGAACGAAGAAATGACGAAAATACAATCAGTTTTGTCAGACGATAAGAATGACTGGGAGCATAGAGTAGCAGCGCTCAAGAAAATTCGCAGTTTGGTTCAAGGTGGGGCACTGGAATATGACAACTTCGTCTCGTTACTAAGACTTCAAGAAGGAGCGTTCAAACTTTCGACAAAAGACCTAAGATCAACTGTTACTAGAGAAGCATGTGTAACGCTGAGCTATTTGTCCACAGTGCTGAAGAGCCAGTTTGATCACACAGCAGAAGCTGTCTTACCGACTCTGATAAATTTAATACCAAACAGTGCGAAGATTATGGCAACCTCTGGCCACGCATGTATCAGGTTTATTTTAAAGAATACCCCTGCTCACCGACTTATTCCAATTCTTACGAACAACATGACTTCCAAGTCAAGCATAATTCGACGGCGTTCCTGTGAATACATCGACTTGATTCTCGTTCACTGGGACACTTCAACGATTAAACCTCGCCTGAGTGAAATAGAAGAAGCGATCCGGAAAGGAATCTCAGATGCAGATGTCGAGGCCAGGGCGGCCATGCGAAGGGCCTTTTGGCATTATCACGATCATTTTCGGGACAAGGCCGAGATTTTGCTGAAATCTTTCGATGCCTCGAAGCAGAAACAACTTGAAAACGACCGCAATCTTTCCAACCTTGGTCCGGCGAAGCCGTCTTCGTCAGGTCGTTTTGTGGCCGTAAAATCAACGAAGCCGTCAGCTGGTAGCAGAGTACGTTCTTCGAGTGCAACGAGTGAAGACGGTGCCGTGAGTTCCCGTGCGCCTTCCCGTCAAACAGTTGGAGCTTCGAGCCGCGCGGCCAGAACCAATCACAGAGAAGATTCTCGCCATGCTGTGGCTTCCAAGACATCAGGTTCTCTTCTCACTCCTATGGCTGCTCTCGGCCGCTCCCTCAGTAACATTGATCAGCGGTCTGCAGAACGAGCCAGCGCTCGATCCAAACTTCGATCAGCGGCAACCCGTGTGTCACCTCAGAACCACGTGCAACAACGCCAACCTCGAACCCAGTACCCCTCTAGGGGAACTGTATCACAACCTGGCAGCCGATCCCAGTCTCCCGAGCGACTCCTTGCCACCTATCCTCCACGAGAGAGGTCTGAGGCTTACTGTCGAAGAGAAAGCGTGACGGGAAAAACGAAAATACCAACTCCAAGTGTCTCGCGGCATCCCAGCGACGAGGCTCTGGATATCCTTGGGTGCCAGTCACCCTACCCCCCTCCCACTAGCTCTCCTTCTTTCCTTCCCGTTCGTAAGCCCCTTCTCTCTGTGCACTTCAGCGACGAGGTCCTGGTGAGGCCTGGGGGCCAGTCGCCCCAGCCTTCCCCGCCTTGTTCTCCTTCCTTTCTTCCCGTTCCTAAGCCTTTTCGAGCGCGAAGTACGTCTCAATCCAGCTCACGCGCAAGTTCGCGCGCGAGCTCGCGTGGAGCGAGTCGAGACACGAGTCCTGAGAGGAGAGGAGATAGGCGGTTGAGTGTTGAGAGAGGATACAGTCCGAGTCATTTGCCAGTGCTGAAGAAAGCAAGCCCGTTACACAATCCGCCGTTAGTTAAACAATCGAGTCAAGGTGATCCTGCGGTGAAAGGCGTCACGGAAGCAGCAGTTTGGGATGCGTGGCATAAAAGTCCCGCACGAAGGAAATATTCGTTTGGGTCCACGAACTCTCAGTGTTCTGATGATGATAATGACAGTGATGTAGGCAGCATATCATCTGAGAGATCATACAGCTCCAGGGGCTCACGGAACCAGCACAAGGCCCTTGAACCAGGCAATGAGGTAGCAGAGATAGTCCGTTTAACAAGCAGCAATGTATGGTCTGACAGAAAGGACGGCGTGCTGTGTCTGCAAAGCTTTCTTCTTAACTCAGGCGTTGTCAGCCAAGTCGAGCTCGCGCGGATTAAAGAGTGTCTCACTCGCCTGTTCTTTGATCCTCACAATAAGGTTTACAGTCTGTTTTTGGACGCGTTGTGTGACTTTATAGTCGTCAACAAAGTGGATCTTCATGATTGGTTGTTTGTTTTGCTGTCACGCCTTCTCACCAAGCTTGGAACAGAGCTGCTTAATTCTTTACAGTCCAAAGTTGTCCGAGTATTGGATGTAATCAGAGATTCCTTTCCTTATGATCTCCAGTTCAGTATTTTAACAAGATTCATCACTGACCAAACCCAGACCCCAAATCTCAAGGTCAAGATAGCCATCTTGCAGTATTTGCAAGGACTCATTGGATTGATGGATCCAAGCGATTTTACCAACTCTGGTGAAACACGTTTGGCGGTGTCCCGGATAATCACGTGGACAACAGAGCCGAAGAGCGTAGACGTGAGAAAGGAATCCGCGGCTGTTATTGTGGCTCTGTTTGAACTGAACACCCCAGAATTCAGCATGATGCTAACTGTTTTACCCAAATCATTCCAGGACGGCGCTACAAAGCTACTTCACAATCATCTGAAAAGCAGCAGTCAAGGCGGAGAGCCGTTTGCCGCTGGTCGCGGATCACCGTCGTCCTCCTCCTCCAACTTTGATGACGTAGAGGAGCGGCCGAGGTTGAGGCTTGGTTACAGAACGCTATCGTCATCCTCAATGAAAGGTGTATCTCCGGTAAAGGACGAAAACCGAGGCGATCATCCGAGCTCTCCCGATCATCACACGAAGATACCCACGCCTACGAAGACATCTCAGAGTCCTCGTGGCAGCCAGACAAGGTTTGGTTTTTCTCCGCGGTCAGCTGCCAGTTCTTTACACAGAGAAAACAGCGTGGAAGCTGAACCGTTGAGCTCCAACGAATCGCTCGATGGAAGGTACGCATCTCCCCCACCCACCCACCGTGCGGATGCCGCTTCGCATCTGGCGGAAGACGCCCCGAGTGTTTCATCCGGGTACAACAGTGATGACATTACTTCCGTGAATGCAGAAAACCATCCTCGAGCTGCTGGTGCAAGTGGTCCGACAAGTTCGGGTGTTCCCGCGGGCGGGTCTCCCACGGGACAGAAGTATGACCCAAGGCAGTACCAAGATCAACAGGATGATTTCCATCCAGTGAGTACACAAAACATGCTTTGCTTCCTCAAATACGTTTTTCTCCTTGTATTTAAAGTAACAGCTGAAATTTCTTTAGTAGTTTACATTCTTTGCTGCGAGCTGCAGGCTGGTAGCACAACAGACCCCCACCCTACCTCCCTACTCGTGATGGTTTTTGTCCCTAACGCCTTTGTTTCATGTCACATGAAGGTACCGGAAATGAACGGCTTTCTAACCGCTGGCCGGAAGAAGAATGGCGAAGTTGAGGACGAGCTGGATCAGTCACTGGAGGGAATGGATCATAGTGATGACCAGTTTGATAAAGATGTGTCCCTAGAACATGCAGACATACTGGCACCTCTTATGGTCCCTCTGGGAGCGCCCTCGGGTATGCAGACAGAGGAAAAGAAAGAGGCCCTAGGAGAATTGCTAAGGATGGCCCGCGAGGAGACACCTGAACTGTGGGAAGAGAGCTTAAACACACTGCTGTCTTTGATCATGAAAAATAGTGGCGATGATGAGCCTGCTGTCCGATTGTTGTCTCTTCGCGCGCTGAGGGATCTGGTACGGACTAAGCCCCATGCCTTCAACGGACCAAACGAGAAAATGATCGAGACAGTTCTGATCGCCCACAAGGACTCGCAGAAAGAGGTTGCTAGGGTCTCCGAAGAGGCTGCTGGGACGATCGCCAAGTCTCTGCCTCCAGAGATCTGTCTTCAAGCGTTGTCCCCAGTCCTCAGGGAAGCAGAGTTTCCCGTCAACCTCGCAGCTCTTAAAATGACAATCAAGGTTGTGGAAGATATTGACAGTGAGACGATTGCAGAATACCTGGGAGAAATAGTTCCTGGACTAATTAGGTGCTATGATCACGTCGAAAGCAGTGTTCGTAAGGCCAGTGTGTTTTGTCTCGTGGCAATACACAGTGCAGTTGGCGAGGAGACTTTAATGCCACATCTGGCTGAGCTATCTGGAACAAAGATGAAACTACTCAATCTCTACATAAAGAGGTCCCAGGCCGGAAACGGTGGGGCTCGTCCGTGA

Transcript

ANN13493-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7Z460	CLIP-associating protein 1 OS=Homo sapiens OX=9606 GN=CLASP1 PE=1 SV=1
A1A5K2	CLIP-associating protein 1-B OS=Xenopus laevis OX=8355 GN=clasp1b PE=1 SV=1
Q4U0G1	CLIP-associating protein 1-A OS=Xenopus laevis OX=8355 GN=clasp1-a PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001513 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12348 all species →	CLASP_N	CLASP N terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024395 all species →	Domain	CLASP N-terminal domain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR034085 all species →	Domain	TOG domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21567 all species →	CLASP	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0000776 all species →	Cellular Component	kinetochore	Interproscan
GO:0005815 all species →	Cellular Component	microtubule organizing center	Interproscan
GO:0005876 all species →	Cellular Component	spindle microtubule	Interproscan
GO:0005881 all species →	Cellular Component	cytoplasmic microtubule	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0040001 all species →	Biological Process	establishment of mitotic spindle localization	Interproscan
GO:0045180 all species →	Cellular Component	basal cortex	Interproscan
GO:0072686 all species →	Cellular Component	mitotic spindle	Interproscan
GO:0090307 all species →	Biological Process	mitotic spindle assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16578	CLASP1_2; CLIP-associating protein 1/2	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.