Gene detail

Detailed information of ANN13523-RA in Leptoseris scabra

Genomic Location: Scaffold_7__1_contigs__length_55811456:19642925...19648762
NR annotation: XP_029209683.1, probable actin-related protein 2/3 complex subunit 2 [Acropora millepora]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9VIM5	Actin-related protein 2/3 complex subunit 2 OS=Drosophila melanogaster OX=7227 GN=Arpc2 PE=1 SV=2
Q6IRB1	Actin-related protein 2/3 complex subunit 2-B OS=Xenopus laevis OX=8355 GN=arpc2-b PE=1 SV=1
Q0IH88	Actin-related protein 2/3 complex subunit 2-A OS=Xenopus laevis OX=8355 GN=arpc2-a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006335 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04045 all species →	P34-Arc	Arp2/3 complex, 34 kD subunit p34-Arc	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034666 all species →	Homologous_superfamily	Arp2/3 complex subunit 2/4	Interproscan
IPR007188 all species →	Family	Actin-related protein 2/3 complex subunit 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12058 all species →	ARP2/3 COMPLEX 34 KDA SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005885 all species →	Cellular Component	Arp2/3 protein complex	Interproscan
GO:0015629 all species →	Cellular Component	actin cytoskeleton	Interproscan
GO:0030041 all species →	Biological Process	actin filament polymerization	Interproscan
GO:0034314 all species →	Biological Process	Arp2/3 complex-mediated actin nucleation	Interproscan
GO:0005200 all species →	Molecular Function	structural constituent of cytoskeleton	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05758	ARPC2; actin related protein 2/3 complex, subunit 2	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.