Gene detail

Detailed information of ANN13555-RA in Leptoseris scabra

Genomic Location: Scaffold_7__1_contigs__length_55811456:20640428...20643171
NR annotation: XP_020632453.1, collagen alpha-1(II) chain-like, partial [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q91717	Collagen alpha-1(II) chain OS=Xenopus laevis OX=8355 GN=col2a1 PE=2 SV=2
Q6P4Z2	Collagen alpha-1(II) chain OS=Xenopus tropicalis OX=8364 GN=col2a1 PE=2 SV=1
P02467	Collagen alpha-2(I) chain OS=Gallus gallus OX=9031 GN=COL1A2 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01410	COLFI	Fibrillar collagen C-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000885	Domain	Fibrillar collagen, C-terminal	Interproscan
IPR050149	Family	Collagen superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24023	COLLAGEN ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005201	Molecular Function	extracellular matrix structural constituent	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0030020	Molecular Function	extracellular matrix structural constituent conferring tensile strength	Interproscan
GO:0030198	Biological Process	extracellular matrix organization	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan
GO:0062023	Cellular Component	collagen-containing extracellular matrix	Interproscan