Gene detail

Detailed information of ANN13576-RA in Leptoseris scabra

Genomic Location: Scaffold_7__1_contigs__length_55811456:21280112...21284164
NR annotation: PFX20067.1, Transposon Ty3-G Gag-Pol polyprotein [Stylophora pistillata]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN13576-RA

ATGTGGGTCTGCGTACCATTTCCAGAGAGATTGCCCGCAGGGAAACTTCCGCAGGGCGGGGGACAGATCGTAAACGTAAGTCGCTCCCCGCCCGAAGACCAAGTACCGGTGATACGTATAAGCTCCATCCAATCTAACGTGTTTTTACTTGACTGCAAGATCCGAGGGGTCCCTGTGAGTGCAGTAGTGGACTGTGGTAGCCCAATCTGTATTTTGAGTAATGAAGTTTTTAAGTGTATTGGCTTAACCGACACCCTAGGGAAGGTTGGGTCCAAGGTCGTGGGTGCTGAGGGCTCACAGCTGGACATCTTGGGAACTATGGAACTAGACACAGCCCTCAAGGGGATAAAAACTAAACAGCTTTTCTATATCTGTGACAACCTCAAGCAGAGTGCCCTACTTGGGGTGGACTTTTTAAGGGACAATGGGTGTGTTGTCGATTTTAGCAAGGGAATCCTTCACGCTGGAAACACAGAGGTGAAATTGAGAGATGAATCAAGTTGGGGGGTGCACAGAGTCTCCCTGGTAGAAACTGTTACTATCCAGCCAGACCGCAAAGTTGATCTCATGTGCCAGGTTAATGGGGCAAATTTGGAGGGAATTCAAGGAGTCCTTGAACCCATGGATAAATTCTTTGAAAGGTTCCCAATTGCAGTGCCTAGTACTCTATCCTCAGTCAGTAGCGGATCAGTCCCAGTTCGTTTCTACAACTACTCTGATCAACCAGTTACAATCTACAAGGACACAAGTGTGGGGGAGTTCTGTCCCGCCGTAGAGAGGGGCCAAGCAATACCCACAGCGCGAAATTACAGGGTTGAGTCCACCTCTGATGACAGCCATATAGGAACAATGAATTGCAATGCATTGTCAGTTGAATTGGAACCAGGTTGGGCTGTAGTTGACGAGATGAGGCAACTGTTCCCTATAGATAACGATCAGATAACGGAAGATCAGAAGCTGAGCGTGTGGAAAATCATGGCCAAGCACTCTAATGCAGTATCCAGGGGACCACACGATATTGGCCACTGTGCTAAGGCACAACTTAGAATTAACACCGGAACTGCAACTCCTGCGAGACTTCCACTGCGCCGCTTTTCACCTCAACAGGAGGAGTACATAAGCAAGGAGACGCAAAGGTTACTTGAGAGAGATGTGATAGAGCCGTCTACCAGTCCTTGGAGTGCTCAAGTCGTCTTAGCTTCTAAGAAGGATGGCTCTTACCGTTACTGTGTTGATTTCCGCAGGCTAAATAGTGTCACTGTCAAGGAACACTACCCTATTCCAAGGGTGGAAGATATGATCGATACTCTTGCTGGAGCGAAATTTTTTTCAACCCTGGACCTTGTCTCTGCCTATCATGCGTTTGAAATTCACCCAGATGACAGGGAGAAAACAGCATTCTCTACAAAGCAGGGACACTGGCAGTGGAAACGAGTACCCTTTGGGCTTTGTAACGCAGCTCCCTTCTTTGTACGGCACATTGCAAGTCTCTTAGCAGGAATGACATGGGAAGAACTCTTGGCCTTCTTTGATGACGTCCTTGTCTTTAGCGCCACTTTTGCTAAACACTGTGAGTCCTTAGATCGTGCTCTCTCTCTCATAGAAGAGGCCGGGTTGAAAGTGAAGCCAGAGAAATGCCGTCTGCTACCACCCCGCGTACCATTCGTTGGACATATCCTGTCAGCCCAAGGAGTTTCCACAGATCCCGAAAAGGTTTCCGCAGTGAAATCCTGGCCACCTCCGACCAACGTGTCTGAGGTACGTGTTTTTCTGGGAAAGATTGGTTACTACAGAAAGTTTATTCCGGATTTTGCAACTCTTGCGAGTCCTCTTTTCCAGCTTGAGGAGAAGGGGCGGAACTTTGTGTGGTCCAGCGACTGTCAGAGGTCTTTCGACACCCTGAAACAAGCCCTTTGTGAAGCACCGGTCCTCGCATTCCCAAGATTTGACCTTCCATTTATACTAGACACCGATGCTAGCACAACCGGTGTTGCGGCTGTGTTGTCTCAGGTGCAAGATGGTGAGGAGCGCCCAATTGCATATGCTGCTAAGGCCTTGACAAAATCACAGAGAAAGTGGCCGCCAACCAAGATTGAGATGTATGCGCTAGTGTTCGGGACAGAAACATTCTACCCATATTTGGTCAACAAGCAGTTTGTTGCTCGTCTGGATCATCGATCGTTAGTGTGGCTTCAAAACTTTAAGCATCCAAAACCGCAGGAAGCCCGATGGATTGAGTACCTTCAACAGTTCGACATGAACATAGAGCATCGTTTAGGCCGTTTACATGCTAATGCTGATGGTCTATCCCGTCGACCTTGGCCAGAAAACTCCACGTCTGACACGCTGAATGAATCAAGCAACTCTTGTGCACCATTGATTCTTGGAGCGACTACCAGCAATGGTACCACACCTTCCGTTCAGGATGGGAACCAGTCGGAAACCGGACACCCATACCCACTGTGGTCCGATGCTCACCTTAGAACAGAGCAGTCCAAGGACAAGCATTTGAATGTAGTGCTGCAGTGGCTTAAGGCAGGAAGGAGACCACCTAAAGAAGAGATGGGTGGGGCTGATCGACATACGTGGTCTCTATGGGGTCAGTACGAACGGTTGCTTTTGAAGGACGAGGTGTTATACCGGCGGTGGTTTGATGAGAAGACTGGGCATGAAGGCCTACAGTTGTGTGTCCCACAGCAGTTAAAGGGCGATGTGCTGCAGGAGTTACATGACCAGTGCGGACACCTGTCAGTACGTAAGACAACAGATGGTGTGCGGAAACGCTTCTACTGGGTTGGCCACACTGCGGATATCGAACTGTACTGTAGAACGTGTCACACCTGTGGCTCCAGAAATGGTCCGATTCCACGGGCGAGAGCACCGATGCAGTCTATTAAGACGGGCTACCCACTGGAGAGGATTCAGATCGATATTCTCGGCCCTCTTCCAGAGACTGACAGAGGAAACAAGTTTGTTGCTGTTGTGGTGGACATGTACACCAAATGGCCCGAAGCATACGCCTTGCCTGATCAAGAGGCTGGCACGGTCGCGCAAGTTGTCATGGACAACTTTGTATGTCGTTTTGGTTGCCCTCGTGGAGTGCTTAGCGACCAGGGTCGTAATTTCGAGTCTCGGACATTCCGCGGCTTATGCAGCTTGATTGAGTCCGTCAAACAGAGGACAACGCCATACCATTCTCAGTGTGATGGGGGAGCAGAACGGCTTATCCGCACAGTTACCAGTGTTATTTCCAAGATTGCAGAGGAGCAGAAGGAGTGGGATCAGTATCTTCCTAAAGTCCTCCTGGCTTTGCGAGCATCCACCCATGAAACGACCGGCTTCTCACCCAGCATGCTCATGTTCGGTAGGGAGCTGAGATTGCCTATTGATGCAATGAGAGGGGGGCCTCCATCAGAACGACCTTCTGATTACCCATCTTTCGTCAAGAAGCAGCATGAAATCCTTAGAGGAGTGTACGAACGAGTTGGTGAAAACCTGAGGGTAAACCTCCGTCACCAGAAGGATGTCTATGATGCACGCTGCAAGGGAAACTCTAGGCCGTACCGAGAGGGTGATCTGGTATGGCTGGAGGAAAAGGCTGTTCCCCGTTGGTTACACCGGAAGTTCTATCGCCCCTGGTCCGGACCATGGCGAGTAGTGAAGGTCATATCTGACGTCACGTACAGGATCCAGTGCGAGGAGGTGGTACCCACACGGGAAAGACGGAAAACGAGAATGATTGTGCACTTTAACCGTCTTAAACCGTACTTACCGAGGCCTGCTCAGCTTCAGCCAATGTCGCATGATGTCGAGGGGGTCGCAGATCTGAATGTTGAAGAGCGTGTTGTGATGGAGTCACCGACGGCTCGAGGTATAGACGCCTTACCTGGGGATCTGGCGCTGACGGAGAATGCCGCAGTTATCAACCGTGAGTCAGACCGGCGACCGAGACGTTCAAACCGGGACCGCCAAGCTCCTGCCTGGATGGGAGACTTCCTTGTGGGGAAGGACATTGATAATGCCCTTCCTCCACTAGGGAGGGGGGGTGTGTAA

Transcript

ANN13576-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P10394	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1
P04323	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
Q8I7P9	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000010 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan
PF13975 all species →	gag-asp_proteas	gag-polyprotein putative aspartyl protease	Domain	Interproscan
PF17919 all species →	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR041577 all species →	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN13576-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.