Gene detail

Detailed information of ANN14360-RA in Leptoseris scabra

Genomic Location: Scaffold_7__1_contigs__length_55811456:40679293...40700447
NR annotation: XP_044178800.1, collagen alpha-1(XI) chain-like isoform X2 [Acropora millepora]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN14360-RA

ATGGCAATGAGGTATTATTCAGTGAAAGACATCCACACTGATCTATACTCGAAAAAAGGACATCAGAGTCCTCCTATATTGAGTCGAACTGAAGCCCTTCCGATTACTGACACTGAGCTACACGCGGAAATAGGATATCCGAGTCCTCCTATAACGAGTCGAACTGAAGCCCTTCCGATTACTGACACTGAGCTACACTCGGAAATAGGATATCCGAGTCCTCCTATAACGAGTCGAAGTGAAGCCCTTCCGATTACTGACACTGACCTACACGCGGAAATAGGATATCCGAGTCCTCCTATAACGAGTCGAACTGAAGCCCTTCCGATTACTGACACTGAGCTACACTCGGAAATAGGATATCCGAGTCCTCCTATAACGAGTCGAACTAAAGCCCTTCCGATTACTGACACTGACCTACACTCGGGAACAAGATATACGAATCCTACTATATGGATTCGAACTGAAGCCCTTCCAATTACTAACACTGAACTTCACTCGGAAACAGGATATAAAAGTCCACTTATATGGAGAATGGATTTTTCAGAAATCCACGAAGATGAACTGGGAAGTCTTGGAGTTGACTTTGAACATGGAATGCGGGGACCAAGACCACCATTCAGACATCATGGACCACATCCATTTCCTCCTTTTGGTCCTGGAGGACCACATGGACCTCGCATGCCACCAGGAGGACCCATGCCAAGACACCCAGGTCCAATGATGATGGGACCTCCAGGGCCTCACCCACGTGGTCCCTTAGGGCCCATGATGCGTGGCCATATGCCTGGCCCTCATGGGCCACCAGGTCCCATGGGGATGCCGCCAGGACACATGAGACCCAGGATGCCACCAGGAGAGCCGGATGGTCCCCACATGTGGGGTGACAGGGGCAGGGGAAGAAGACCCGGGAAGTTCCCGCCTCAGCGGCAACAGAGTAAGGAGGGTCCCAAGGTGAAGAAAAGCCCAGCTGTTGAAAAAACAAAACATGAAAATTCTAAAGCTCCCAGTGGAGAAACCCCAGGACCAGCAGCAAAGAAGCTGAGAAAATCAGAGGATGAGTTGGAGGATGTAGATGAAGAAAAGTTGTTAAAGAGTGATGATGAAGGCGAAGGGGCAAACAATGTTGATTTGGATGCTGTGAGCATACATGGTGATGACGAGCTGGATGATATTGATAAAGAGATCAAAGGCCTCTCTGAGGGAGCTGCTGAGAACAGTAAAAAAACACCTCAAAAAGTGGAAGTGAAAAAGGAGACACCGCAAGTTCCCATGGGTAAAGAGAAGATGAAGAACGACAGCGACAGCGAAGATGAAGACAAGAAGAACAGACAGCGGTTCAAGTCTGAACGACCAAAGGAACAGCAGCTCAAGTTTGAAAAACATGAGCCCAAAAGAGACTTCAGAAAACAAGATGACAGAAACTGGAACAAGAGGGACCAAGGTAGAGGGCGTGGCAGAGGTGGACACGCAATGATGGGTCCACCGCCACCGGGAATGATGCACCCAGGAATGCGTCCACCATTCCCTCCAAGAGGACCTGACCCCTTTATGCATGGTCCGAGACCAGGAATGGGTCCAGGACCAGATCATGGGCTTGGATTTGGTCCCAGGCCTCGATTTCCAATGGGTCCAAATGGACCACCCCCTGGTCATATGCCTGGGCCCCCTGATGGTCACATGCCTGGACCACCAAGACCACCACAGGGCAAGAATATTCACATCAATCCACACTTCAGACCTCCCCCTGGAGGGAGAGGAATGCCAGAAGGTCCACCTCCCATGCGAGGACCACATCCAGGTCCCCCACGACCAGAGATGCCAGGGCTCCGCATGCCTGCTCCCCAGCCAGGCCCAGCACGTCCAGAAGGTGCTTTCCCACCGGGCCCTGGAGGAGGAGACTTTGGGCCTAGAGGTCCACCCCCAGCGAGAGGGCCACCATCAGAACAGGCTCCCAGACCCAGGATGGGTCCTGAACATGGCCCACGACCTATGGGCCCTGGAGGTCCTGGCCCAATGCCAGGTCCTGGACAAGCACCAGGGCCTAGACCTGGCCCAGGTCACTTTCCAGAGAGTGAGATGAGACCACCCCATGGAATGGGCCCTGGAGCTCACCCACAACCAAGGGGAGCTCCACCAGGGGCACCAAATATGGTTCCACCACATGGCCCCATACCAGGACGTGGTCCTGCACCAGGAGCACCAGTTGCAGGACCTCACAGTAGCACACCAGGAGGTCCTAGTCCCTTACCAGGTCAGCAGCACCAAGCTATGCCACCCAGGGTTCCCACACAAGGGATGCCCTCCCCAGCAGTACCCCCTGGAGGCCCCATGCACCCAGGAGCCATGCAGCCAGGGATGCGACCACCAGGAATGCACCCAAATCACGATGTACCAATGTCTGAACCTGAACGGATTGTCATTGGCCATCGTGTGACAGTACCTAATATGGAAGCAGCAAATGTAGCCATGCGAGCTAGTGTTCCTCCGCCAGGATATAACGCTGCTGGTGCTGCAGCTGCCGCTGTGGCTGCAGCACAAGTGCAAGGGGCTAATTTAGCAGCTGCTGCCGCGGCCGCTGCTAGGCAACAATTTCCCTATGGACAGCAGTTTCCATATGATTACGCTGCTATGTATGGTGCCGAGTGGCAGCTGATGCAGCAGCAGCGAGACGCTGCTTATGCTGCAGCTTATGGACTGGATAAACACGCAAAGAGTCACAAAACAAAGAAGCATCGTAGACGTTACAGCGCTGACAGTGCAGAGAGCGACTTCAGCAGCGCATCAAGGTCACCATCCAGATCAGCGTCACGGTCATATTCCAGATCACCTGCCAGGTCTTGGACTCGTTCACGCTCATTATCATTGTCACGTTCACGATCAAGATCATCATCCAGGTCAAGATCGTTCTCAAGGTCAGTTTCACCGCGGACGCCCCAGTCCAGATCACCTCTTCGTGTGGCGGCTAAGCCAGCTCCACACCCAAGACGAGCCGTGGACAATCGCAGGGAGAGAGAAAGACCACCAGAGAGAAACCGGGAAAGAGAACGAGAGAGGCCAAGCAGAGAACGACCAGACAGAAGCAGAGAACCTTACAGAAACCGCGAAAGGAATGACAAAGACAAACCAAGGGAGAGAGAGCAACGAGAACAACGGGAATCTCGAGAATCGGCACGACATGACAGGCCGCGGGAGAGAGATAGAGAAAGGGAAAGAGGAGAACGGGACAAGGCAAAAGAGAGAGAAAGGGACAGGACAAGAGAAAAGGAGAAGCCTAAGGACAGCCATAGAAGGAGTCGTAGTCGAGATAGGCCATCTCACCGGCGGGAGAGCAGGGAGTCAAGACATTCGGAGAATAATTCGTCTAAGCGTATTGTGGTTGGTCCGTCTGAAAGTAAGGCCAAGACATCTGGTTCTACGCCGGACTCCAAGGCCAACCGTGTTGTTGTAACCAAGGCATCCAGCAGCGGCAAACCTTCAAACCGTGTTGTGATTGGATCTCTGCCTGAGGCCATAACCCCAAGCCGGCTGAAGGAGCTTCTGCAAGGGATTGGACCAATTCAGCAACTGAAAATGTCGACAACCAAGCACAAGGCTTTGGTGACGTTTGAAAAGAATGAGCATGCATTGGCCTGTCGCCAACAATGGCACCGAAGTGGAATTACTTATATTAACGACTTACTCAATGACGACCTTAGTTTCTTATCGTACGATATATTTCAACATACTTTTCATCTAAAAGTTCCTTTCACTACCTATTATGGTTTAATAAACGCCATTCCACCGAGTTGGAAACGTGAATTCAAATCCACAAGAACACCAATTGAAAATGAAAACGTGTCACAGGAACCCTCTCTGCCCAAAAATATTACCACCCGATCTGTTTATACAGCAATAATAGATCACTATTTTCAACCTCCAACTGCTGAACCAAGATTATTACGCTATGGTTTCTCCAAAGATTGCCTAAAAAATGTTTATAACCTCCCCTTTGTGACCACGCTTGAAACAAAGCTTCAAATTTTTCAATTTAAAATTATCCACAACATACTTCCAACTAGGTTTTCCCTTTTTCGTATGAAGCTATGTGATTCCGAAACCTGTCACTTATGTAAAATTCAATCACAAACGCTGCCTCACCTTTTCTACCGGTGTCCTGTAATTTCCAATTTTTGGGCTGCTTTTCAAATTTGGTGGTTTGAAAATCACCGAGAGACCATCACTCTCACCGAACGTGACATCCTTTTTGGGTGGCATGATAACGCTACAGAATCTAAAGACATTTTAAATTACATCACCCTTATAGCCAAGTATTATATCTTCTGCAAAACCCAAGACTCCGACGATGTACCCTTTGATGGCTTCCCTTCTTTTTTAAAAAACAAATTGGATACTCTTCAACAAATAGCTGTTAAAAATAAAAACACTGACAATTTCAATAAGAAATGGAAAGACTTTATTTAA

Transcript

ANN14360-RA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005437 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF13966 all species →	zf-RVT	zinc-binding in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR026960 all species →	Domain	Reverse transcriptase zinc-binding domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15439 all species →	RETINOBLASTOMA-BINDING PROTEIN 6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN14360-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.