Gene detail

Detailed information of ANN14567-RA in Montipora grisea

Genomic Location: Scaffold_1__1_contigs__length_50156999:32217802...32220468
NR annotation: XP_044165837.1, uncharacterized protein LOC122949848 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN14567-RA

ATGGGACTCCTCGTGCGAAACTGCATTCGCCAAGCTGAAGCAGATGCTGACCGAAGCACCAGTTTTGGGGTTTCCAGACTTTTCCTGTGGTTTTTTTTGGAGACTGATGCAAGCTTTAACGGCCTTGGTGCAGTTCTGTCTCAGAAACAGGAGAATGTATTGGTTGTACTGGGGTATGCCAGCAGAGCCCTAAAGCCTTGCGAACGTAACATGCAAACTTATTCTAGCATGAAGCTGGAACTGCTCGCCTTGTATTGGGCCGTGACGCAGAAGTATCGTGACTTGCTGTTGGGAACTGAGTTCATTGTTTTCACTGACAACAACCCCCTGAGTTATTTGCAAACCACAGCAAAATTGGGTGCGACCGAGACGCACTGGGCTGCAGAGCTCGCTCAGTTTACATTCACAATCAAGTACCGCTCAGGAAGAAGCAACAAGAATGCAGATTCGCTTAGTAGGAAGGTGTACCATGGAGAGGAACCCCCAGTGACACGATTAGAGGAAATTGTGAGTGACTCATTCTCTTTGCAAGGGAGGGGGCGAGTCACCCTTGTACCTGAGTGTGTCAGAGTGTGTGCTGAAGACACAATAGCGAGTGCCCTCCTTCAAGAATCCCGTATCAGGTCAGCGGTTGTAGCACTCCAGGCTGTGTCTACATTCCCGTCCATTTCTCACGAGGATATGGCTGTCATGCAGAAAGGTGATGAGGCAACTGGTCGGCTGCGGTATCACTGGCAACGGAGGCATCCGCCTACCCTCCGTCAGCTGATAAAAGAACTCAAAACTGCACGTAAAATGCTGAGGGAGTGGAAGCGAATAAAGGAAGAGCATGGCGTCCTGTACCGTGTTGTTCAGATAAACGGTCAAGGTGCACGGCAGCTGATACTCCCTGGTTCCTTAAAGAGCAACATTCTGAAATCCATCCACGTCGATCTAGGTCATCAGGCAGTAGAGAAAACAACGGCACTTGCAAGGAGCAGATTCTATTGGCCTGGGATGATGGCTGATGTGGCTGACTACTGTCGGACATGTGGGCGTTGTACTCTGGCCAAAGCAGGGAGGAAGCTTCATCCCACAATGAGTTCCCTGACAGCCACCAGACCACTGAAGATTTTGGCAGTTGATTTCACTCTCCTAGAGAGAAGTACAGGAGGCATAGAGAACGTGCTTGTCCTTACCGATGTTTTCACGAAATACACGCAAGCTATTCCCACAAAGGATCAGAAGGCGACCACAGTAGCTCGAGTCCTAGTGAAAGAGTGGATTGTAAGGTTTGGGCTACCTAAAAGGGTTCACAGCGACCGAGGGCGCAATTTTGAGAGCAAGGTGATTCAGGAACTTTGTAAGATCTATGGCATCTCTAAGAGTCGCACATCCGCGTACCATCCAGAGATCAACGGTCAATGTGAACGCTTCAATAGAACCATGCATGACCGTCTGCAGAAGAAACGTAAGTGGTCAGAATTTCTTCCAGAACTTGTGTTTGCATACAACTGTACCCCATTCTCAACTACTGGCTACTCGCCCTACTACGTGTTCTTCGGCAGGGAGCCGACACTTCCAGTGGATCATCTAATTGGGTCAGCAAGCCATACTGAAGAGTGTAAAGAATGGATCACTGAACACCAGGAGCGTTTAGAGCAGGCTTTCAGACTAGCCTCAGCGAGAACAGAGAGGCAGGCACTGCGACGCCAAACCAGGAACAACCTGAAAGCCACCGATACCAGCATTCCTGTAGGGTCCAGGGCGTTCCTTAAGAATCGTGTCCAGGGTCGCAGTAAGATTCAGGATGCGTGGGATGCAACCCCGTTCAAGGTTGTAAAGCGACTTGATACTGGAAACACGCATGTTGTGGTACCATTGGTAGAAACAACGGCAGAGGAGGAGTTCAAAAAAACTGTCCACAGGAATGACATTCTCCATGCAAAACAACTAGTGAGAGACATTGCCTTTGATGATGGCAACATAGGTCCCGGCTGTATGAATGCCAGTGAAAATGCAATTGGTAATGGTGTACCGTTAGATAACGAAGCAAGCAGCAGTGATGAGGACGACGTTGTTGAAGCCGTCATACCATCCAGGCAGAGCAGTGGCCCCGTTGCTGTACCACACGAGAGTCCGTCTGAAGTTGATGTACAAGTGACACATGGCGACGGTAACCACACACAGAATCAAGTGGAAGTTCTTGAGGAGGCTGCCCCTGATCCGGACTATGATGATGAACCACCAGTTGGTGATTATGCTGTTAATGAAGGTGGTGCCCCCACAGTTCAAGCCGATCCTGAACTTTCCACCGATGGTGTAGATCCTGAGCTCCCTCCTGGCGCCGCAGACCCTGAACCCTCCACTGACGGTGTGGATCCTGAACTTTCTACTGTCACTCTCGATCCAGAGAAGGCCGAGGCCCTACGGGCCAGTACCGGTGGAGGCGCAGCAGTGGAGGTGACAGCAGTTAGTGATACCAACAACCACCCTCCGGTCAGACGTTCTACCCTGATGGGAGCTGGACAACACTCCAATCCTCACCACTTGCCGAGACCTGCGATGAGGGAAAGCGTGGATGCGGCAGTGATAGACCCGAAAATGCTGAACTGTGTAGCACAATCCAACCTGCTTTTAATGCAGTCGTTAGCTAAGAATACTCAAAAATAG

Transcript

ANN14567-RA

Protein

Uniprot

Uniprot term	Description
P20825	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15338	GEN1, YEN1; holliday junction resolvase GEN1/YEN1	EC:3.1.-.-	DNA repair and recombination proteins	ko03400	deepkoala