Gene detail

Detailed information of ANN15318-RA in Montipora grisea

Genomic Location: Scaffold_12__1_contigs__length_53323332:24383532...24395999
NR annotation: XP_044180256.1, proline-, glutamic acid- and leucine-rich protein 1-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN15318-RA

ATGGCGGCTGAATTTTCCACTTTAGTTAGTTCACTCCTCGACTCGAAACCAGAAATATACGTATCCTTTTTCCTTGATTGTGTGAATTCAAAGCAATATCTTAATACTGAGAAAATCCCCGATGGATGGATAGGCAAAGTCAATACCTTCCTCAGTTCAAAGACTGACAGTTGGTTAGGTTTATGCCTCCTTGGAATCACTATTGAACAATGTGACACGGATACTTTTACAAAGAATTGTGTTTCATGGTTACGGACTCTTCTACAGTTGATACAGAGTTCATTCAGATCAGATGTTATCAATTATTGCAGTAAACTCATTGATGATATTTTGCAATATACAGTAGAGTTTTCAGAGCTCTCAAGAGAAGTGTCCAAATCAATCATCCCTGCAATCATTTCTCCTATATTGTCCAACAAATCTCCAGATAAGCCTCCTTTATTGTCCATCCTGGTCTCTTGCTTATCTTTCTTTCCTGGTCCAACAGGGCCTTTCAAGAATCAAATTCAAGCTTTCCTGTTTCTTCAGCTTAATTCACCTTGTGAAGAAACAAGGAAGAGTGCTTGCAGGTGTTTTGCACTGTTGCCAAGATGCAATCGCAGCGTAACTGGAGGAAGTAATCCTGTGTGTCCCTGGGAAGTACAGTGGAACAAAGTTATCAATACCATTCACAAGCTACTGGATACTGCCTATGAAAATGCTGAACCAGATGCCTCAAGGCCCTCTGGGAAGTCATCATCCCAGCCAGAAACATTGTCACTGGGTGAAATTCCCTGTGCTGAACCTGGACGAACTTACACTCTGGTTTCAAGAATTAATTCATTGTTAAATTGTCTGTCTGCAATGATCAGGGAAGATTTCAATAGAGAGGTTTCAGTCCCTGTTGATACCAGCATCAGTCTCTTTACAAGAATATTGTCTGTCACAGGGCACTCATTGAAAAATGCAATCATTGTCGAATCAGTGTTGTTACATGCAAGTTTACCCTTGATTCATAAAAATGCTGTAGATTTTCTAACAAGCCTCATAGACAGGTGTGGAACCCTTTTCATGCCATATTGTGATCTACTGATGAACTATCTTTTGCAAGAACTGTCTTGGACAAAATGCCAAGATCCCAATTATGGTTATGACAAACCTTACAGACAACTCAGATGTTCTGTGTATCAGTGGCTAGAGCACTGGGTTCAGTTAACAAACAGCCTTCCTGATGGGAATGGAGTTGTTTCTAAGTGGATACAACAAATTATGGATGACATAGTGCCATTAACTTCTCAAACTAAGTTGCTGCCATCAACTCATTCTGGAAATACACAGATGTCTAAAAAGGCAAAGAAAAGAAAACTTCAAGAAGATGTTCAGCAGTCGTTGGCAGGCCAACAGAAGTTTCATGCTAGTGCTAATGATATGTTAACTTACAGAGCACTTAGAGCTTTATCTACAATGTTGATTGCTTGTGGAAGCAGCATCTCTCCTGAAGCATTCAGGGAAATTCAAGCTCATGTGATAAAGCTTATCATTCAGTGTCAGCAGTCAATTGACAACTCTTATCCCATACCTTATGGCCATGCTGATTGCAGGCAGGCATTGTACCACGTTCTGTTGTGTTGTCTGCTCACCAACTCACCTGACGTTTCATCGCCTGTTAATCATGCTGTGAGATTATTCAGTCACGGATGTCAGGATGGTGATGTCAAGGTGTCCAGTTTTTGTCAGGAAGCTTTGGCGGTTACTAATTCCATCATCCACCCAAGGTCTTTCCCACAGTTGTGCTCTCCTTCTGGTCCTTTATTACTGGGTGCTTCTGAAGAACACTTTACCAATGGACCTATTTCCAGGACCTATCAACAAAGTGAACCTGAATCACAGCCCTTGAGTTCCCTAGGACAATTGACCAATCAGACTATTTCGCAAAGTATTTCAAGTAGTGGAGTATTCAGAAATGAGAACATTGATGGTTCTTTACTCTTAGGTGTAAACGCCTTAGCATCCAGAGAAAACCAGCAGATTCTTGAGGATAGTAATTTCGTGGACACCACGAATGAAGATATTGAAAAAAGTCAACCAAACACATTGGATGGACCCTTGAAATCATCCTGTGACAAAGAAAAAGGAAGCAATGAAAGAGATTGCAACACAGGAACAAATATAGTCATTCCGAAATCAGTAAGCCAACTCACTCCTTTGAGTTTGAACACATCAACGGCACGTGTACTCAATACACAAGGATTTCTCACAGACACCAATAAAGGTCATACCAATGGTGGAAATGTAAACCGGAGAACATTAGAAGATGATATTTGTCCTAACAATCCAGAGAAGCTATGCGACTCAACAAACTTTCTAGGAACATCACAACCCAAGCGGAGGAGAGTTGAGGACAATAATAGCAAATCTAATGATCAAGTGTGCAATGACCACAGTGTCCCTGATCAAAGCAATCACCATCCATGTGAAGGCACAGAGGACAATTCCCAAACTATTGAGAATGGTGATTCCGACCAAACTTCAGAAATGCTGGCTTCATTTGTTGACTCCTACCCAGATTCTGACGATCAAGGGAAATCATGA

Transcript

ANN15318-RA

Protein

Uniprot

Uniprot term	Description
Q58HI1	Proline-, glutamic acid- and leucine-rich protein 1 OS=Xenopus laevis OX=8355 GN=pelp1 PE=1 SV=1
Q9DBD5	Proline-, glutamic acid- and leucine-rich protein 1 OS=Mus musculus OX=10090 GN=Pelp1 PE=1 SV=2
Q56B11	Proline-, glutamic acid- and leucine-rich protein 1 OS=Rattus norvegicus OX=10116 GN=Pelp1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08166	PELP1_HEAT	PELP1, middle domain	Repeat	Interproscan
PF08167	RIX1	rRNA processing/ribosome biogenesis	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012980	Domain	PELP1, middle domain	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR012583	Domain	Pre-rRNA-processing protein RIX1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34105	PROLINE-, GLUTAMIC ACID- AND LEUCINE-RICH PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006364	Biological Process	rRNA processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16913	PELP1, MNAR; proline-, glutamic acid- and leucine-rich protein 1	-	Ribosome biogenesis	ko03009	deepkoala