Genomic Location: Scaffold_12__1_contigs__length_53323332:26251215...26308505
NR annotation: XP_029201830.2, E3 ubiquitin-protein ligase TTC3-like isoform X2 [Acropora millepora]
| CDS | |||||
| ANN15355-RA | |||||
| Transcript |
| ANN15355-RA |
| Protein |
| ANN15355-RA |
| Uniprot term | Description | ||||
|---|---|---|---|---|---|
| P04146 | Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3 | ||||
| P10978 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | ||||
| O88196 | E3 ubiquitin-protein ligase TTC3 OS=Mus musculus OX=10090 GN=Ttc3 PE=1 SV=2 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | E3|E3 activity RING|RING |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07727 | RVT_2 | Reverse transcriptase (RNA-dependent DNA polymerase) | Family | Interproscan |
| PF19179 | TTC3_DZIP3_dom | E3 ubiquitin-protein ligase TTC3/DZIP3 domain | Domain | Interproscan |
| PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | Family | Interproscan |
| PF13639 | zf-RING_2 | Ring finger domain | Domain | Interproscan |
| PF00665 | rve | Integrase core domain | Domain | Interproscan |
| PF07145 | PAM2 | Ataxin-2 C-terminal region | Motif | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR011990 | Homologous_superfamily | Tetratricopeptide-like helical domain superfamily | Interproscan |
| IPR036875 | Homologous_superfamily | Zinc finger, CCHC-type superfamily | Interproscan |
| IPR013103 | Domain | Reverse transcriptase, RNA-dependent DNA polymerase | Interproscan |
| IPR043866 | Domain | E3 ubiquitin-protein ligase TTC3/DZIP3 domain | Interproscan |
| IPR001841 | Domain | Zinc finger, RING-type | Interproscan |
| IPR001584 | Domain | Integrase, catalytic core | Interproscan |
| IPR001878 | Domain | Zinc finger, CCHC-type | Interproscan |
| IPR013083 | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR009818 | Domain | Ataxin-2, C-terminal | Interproscan |
| IPR036397 | Homologous_superfamily | Ribonuclease H superfamily | Interproscan |
| IPR043502 | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR012337 | Homologous_superfamily | Ribonuclease H-like superfamily | Interproscan |
| IPR019734 | Repeat | Tetratricopeptide repeat | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR17550 | E3 UBIQUITIN-PROTEIN LIGASE TTC3 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
| GO:0015074 | Biological Process | DNA integration | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K15712 | TTC3; E3 ubiquitin-protein ligase TTC3 | EC:2.3.2.27 | Ubiquitin system | ko04121 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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