Gene detail

Detailed information of ANN15694-RA in Leptoseris scabra

Genomic Location: Scaffold_10__2_contigs__length_57677642:10716089...10748573
NR annotation: CAH3193194.1, unnamed protein product [Porites evermanni]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN15694-RA

ATGTCTCAAGTAATTTTATACCTGTTATCTGAACTAACGAGGAAGCTTAAGCGACTAATGCTAGGTTCTGATGATGGGGAGGCTAGAAAAAAAAGCAGAGCTGGAAATGATTATATCGATGGCTCAGGTGAACCGGCTGCCGTAAAAAGAGAGGTGTTTGGAAGAGCTCGCCTGCCAACTTCGGTGAATGTCGATGGATTTGGACAGTGCATTGCTGTTTTAACAAGCGGAGGAGATGCACAAGGTATGAATGCAGCCATTAGAGCAGTGGTGCGGATGGGACTTCATGCAGAAGCAAGAGTTTTCACAGTATGGGAGGGGTACCAAGGTCTTGTGGATGGCGGGGATAATATTAAAGAAGTAAAGTGGGAAGAAATGTCTGGAATTCTTCAGTTGGGAGGTACTGTGATTGGTAGTGCAAGATGTCAGGATTTTAGATGCCGTGAAGGGCGCCTTAAAGCTGCCAAAAACATGGTGAATTTGGGAATAACCAACTTGATTGTTATTGGAGGTGATGGAAGTTTGACAGGAGCTAACCTTTTCAGGCAGGAATGGCAAGGACTACTGAAAGAGCTTGTGGAATCTGGTGATCTTTCAGAGGAAGCTGCAAAGAAAAATAATTCTCTCAACATTGTCGGAATGGTTGGCTCAATTGACAATGATTTCTGTGGCACTGACATGACTATTGGTGCAGACACCGCACTACACAGAATCTTTGAAGCAGTGGACGCAATTACTACAACAGCATCCAGCCACCAGAGAACATTTGTACTTGAAGTTATGGGAAGACATTGTGGTTATCTGGCTCTTGTGACTGGCTTGGGTGTTGGAGCAGATTATGTTTTTATTCCTGAGTGGCCTGTTCAAGAAGGATGGGAAGACAGGATGTGTAACCATCTCAGAAAAGTGAGGAACAGTGGTCGTCGTTTATGCATTGTCATAGTAGCTGAAGGAGCTCAGGATGATGCTGGGAATCCTGTGACATCTAACCAAATTCAGGAGCTGATCAAATCAAGACTTCAACATGATACACGAGTTACCATTCTTGGACATGTTCAGAGGGGTGGAGCTCCCTCAGCGTTTGACAGAATCTTGTCCTGTCGCATGGGTGCTAAAGCAGCTCTTGCTGTTCTTGATGCCAAATCTGAAACTGCACCCTGTGTTATCTGCCTTGATGGCAACAAGATCGCAGAGAAGCCTTTAATGGAATGTGTGGAGAAGACCCTTCAAGTCAAGGAAGCTACAAAGGGAAAGAACTTCGAAGAAGTAGTCAAGTTAAGAGGAAGAACCTTCAAGAGGAACATTGAAATCTACAAAGTACTCAGAAAAGTCGAGCCCCCTGCTTCCAGTGGTTGTGATGTGTCTGGCACCTGCAAGTCTGGCTACACCTTGGCAGTGATCAATATTGGTGCCCCTGCAGGAGGTATGAGTACTGCAGTGCGTGCATTTGTGCGATCAGCTCTGTATCAGGGTCACTCAGTCCTGGGCTTAAGGGATGGCATTGATGGACTCTTGCAAGACAAGGTTGAATTGCTGAGCTGGCAGTATGTAGATAGCTGGGCTGGAATTGGAGGCTCCAAGTTAGGCACAACAAGAACATTGCCTTCCAAGGACTTGAATAAAGTTGCAGAACAATTCTCCAAGCACAACATTCAGGGTCTGCTCATAGTTGGTGGTTTTGAGGGATTTCATAGTCTGTTACAACTGGCTGAGGCACGTGGCGATTTTCCAGCATTCCGAATTCCTATGCTGATAATTCCTGCTACAATCAGCAACAATGTTCCTGGTACAGACCTTAGTTTGGGCGCAGACACTGCTCTTAATGTCATTACCGAGATGTGTGATCGCATCAAGCAGTCAGCTAGCAGCGCCACCCGGCGAGTGTTTGTTGTAGAGTGCATGGGTGGCTACTGTGGTTACTTAGCAACCATGAGTGCCCTGGCAGGAGGAGCAGATTTTGCGTACGTCTCCGAAGAAAAACTGACGCTGGATCATTTGAAGAAAAACATCAAGCATCTGATTGAAAAGATGAGAGGATCTGTCAGAAGAGGGCTGGTCATACGAAACGAGTGTTGCAACGAAAACTACACCACTGACTTCATTGCCGCTTTGTATCGTGAAGAAGGACAAGGACTTTTTACTGTCAGAACCAACGTGTTAGGTCATGTGCAGCAGGGAGGATCGCCATCACCTTTTGACAGAATTCAGGGCACCAGACAAGCTACTTTAGCTGTTAACTGGCTCACGGAAAAGATTGACCAGAATAAAAGTTTTGAAGGAAAAGTGGAAACTTCCTCTCCGGACACAGCTTGTCTTCTGGGAATCAAGAAAGCTGCCAACCCGTTCACGCCTGTTCAAAAGCTCAAACTTGATACAGACTTTAAACATCGTGTTCCCACAAGCCAATGGTGGCTGGAATTGCGCGCTCTTCAAAAGATCATGGCTAGATATGACGACAAATTTGAGTACCACCGAGAGGACGAAACACCCTAA

Transcript

ANN15694-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q867C9	ATP-dependent 6-phosphofructokinase, muscle type OS=Equus caballus OX=9796 GN=PFKM PE=2 SV=3
P52784	ATP-dependent 6-phosphofructokinase, muscle type OS=Canis lupus familiaris OX=9615 GN=PFKM PE=2 SV=2
Q0IIG5	ATP-dependent 6-phosphofructokinase, muscle type OS=Bos taurus OX=9913 GN=PFKM PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003848 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00365 all species →	PFK	Phosphofructokinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015912 all species →	Conserved_site	Phosphofructokinase, conserved site	Interproscan
IPR035966 all species →	Homologous_superfamily	Phosphofructokinase superfamily	Interproscan
IPR009161 all species →	Family	ATP-dependent 6-phosphofructokinase, eukaryotic-type	Interproscan
IPR000023 all species →	Domain	Phosphofructokinase domain	Interproscan
IPR022953 all species →	Family	ATP-dependent 6-phosphofructokinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13697 all species →	PHOSPHOFRUCTOKINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003872 all species →	Molecular Function	6-phosphofructokinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005945 all species →	Cellular Component	6-phosphofructokinase complex	Interproscan
GO:0006002 all species →	Biological Process	fructose 6-phosphate metabolic process	Interproscan
GO:0016208 all species →	Molecular Function	AMP binding	Interproscan
GO:0030388 all species →	Biological Process	fructose 1,6-bisphosphate metabolic process	Interproscan
GO:0042802 all species →	Molecular Function	identical protein binding	Interproscan
GO:0048029 all species →	Molecular Function	monosaccharide binding	Interproscan
GO:0061621 all species →	Biological Process	canonical glycolysis	Interproscan
GO:0070095 all species →	Molecular Function	fructose-6-phosphate binding	Interproscan
GO:0006096 all species →	Biological Process	glycolytic process	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00850	pfkA, PFK; 6-phosphofructokinase 1	EC:2.7.1.11	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.