Gene detail

Detailed information of ANN15900-RA in Leptoseris scabra

Genomic Location: Scaffold_10__2_contigs__length_57677642:15402247...15425651
NR annotation: CAH3021222.1, unnamed protein product, partial [Porites evermanni]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN15900-RA

ATGGGAGGTGGTCGCTTACGAGAGGTGGTCGCACAGGGAGGAGCTGAACGAGGGAAAATTGACATCAAACCAGCGGGCAACGATGCTTATCATTGCGAATATGCGTCATTTGGCAGCGGTTTTTCCAGGGGTATTCCCGTGCGAGTGTTTGCTTCAGTAAATCAAGGCAATGGATCATCCCAAGTCCACGATTCTACTCTTGTGTGGGTTGAAGAGATCACAATCAGGCGTTTCAAGGCGTGTGTTGTGATAGGCGGTCAGGGTTCCCGTGGTAACACCACCATCGATTGGTTCGCCTTTCAAGGATCTCAGTCAGGCGTTCAACATGGCGAAACAAGATTTACTCTGTTTACAACTGGAACAAAATGCAACCAGGTGGCGTTTTCTCAAGCTTTTTCAACGGTACCTAAAGTTCATGTCACTGTTCAGCATGGAACTCTTGATCAAAGGAAAGATGCAATGGATGTTTGGATAGAAAGTATCTCTAGAGGACAGTTTGAAGTCTGCCTACGAGAATCAACAACATTTGATGGACCTCACAGTAATCTTAAAGTGAACTGGATGGCATATGAACATTTTCCATCGTCGTGGGATGCTAAAGAGTCAGCCAAGGTTCACTTTTCTGAATACGAGATTCCAACTGCTCAGGACAATTACGCTCTGTGTAAAACTATCAACTTTACAAAAGCATTTTACATGGCACCAGTGGTACTCACAACTGTAATAAATGAAGGCAATAACAACTCCAAAGGAGCTTGCGCAGTGAAGGATCCATTGACCAGTTGGGTGGAGGAGGTTACTAAGACCCATTTTCGTGTGTGCATCAAAGATTACGCTGGATATGATGGTCAGAGAGGCAATGTAGCCGTGGACTACCTGGTTATTGGAGATCTTGATCCCTGTAATAACGCTAGCTGCAAATATTACAGTCACTGCGAAGCTTCGTCCCCACAACAATTTGCCTGCGTATGTGAAAGCAGCTGTCCCTCATACCAAGAGCAGATGTGCGCTTCTAACGGCCGCACTTTCAGAAACCTGTGTTTATTGAAGAAAGAGATTTGTGAAACACGTGGAAACTATACAGAATATCATCCTGGAAGCTGCACAGGCTTTCCGCTACAGAAAGGAAGACACACGTTTCAAAACCATCCATCCTGGGCAGAAGATCAGTGTGAAACCATTCATTTTGAGCCGTTCATATTTTACCCTCACCAAAAAATTTTCATACAGCTTACCGTGAACCATGTAAACTACTCTGATGCAGCCTTTGTTCACGAGGCCACCACACCGTGGGTTGAAAGCATTAATAGCACTCAGTTTACCGCCTGTGTAACTCGAGCAGGGAGGAATGACTACCCTGCAGATAGTTTTGCCACCGTCGACTGGGTCGCTTATCAGGGTGCCCCCTCTGGTGGAGTGGCTGGAGAGGAAAAGTTTTCTCGTTGGTGGACGGGGACCAGCTGTCAGACGGTAACCTTGCCAAACGGGAAGTTTTTTGCCTCGCCAACGATATTCGTAACAGCAGAGCACCAAAGATCCAGTTTGAAACATGATGCAGTCACTGTATGGCTCGAAGACGTCTCGGCCAGTTCGTTTAAGATTTGTATTCGGGAACTTCAAAACTTTGCAGGAGTTCATGACGACATCTCTGTGAATTGGCTGGCGTTTAAGGCCCTACATAGGCCGCTGTTTTCAGAACATAATGATGTCAGCTTTCAAAACAGGAACTTGCCTTCCAAGAATCATAACTTTGCCTTCTGTAAGGATGTGAATTTTATTCGGAGTTACACCAAGTATCCGACAGTGCTCCTAACAGCAAAACATTCAACTAGTGGAGGAAATGCTGTACCAGAATGTAACGGAATTGTAATCTGGATTGAGTTTATCAGCAACTCTGGATTTAGGATTTGCCTCAAGGAGCTGTTTGTACAACGGTTTGATCCTTTGACTGTGTCATACGCAGTATTATCAGACGTATGTCCCGATAGCTGGAGCTATTTCAAGGGATACTGCTATAGCAAAGTCTCTTCCTGTGATTCGTGGAGTAACAGCCAGGGAAAGTGTTCAACATTGGGAGCTAATCTTCCCAGTATTCACAATCAAGAAGAAAATGTGTACGTTCAAAATCTGCACGGCGGGGAACATGCCTGGCTAGGTCTGTCTGACATCAACGCTGAAGGAACCTTTGTTTGGAGCGATGGAACACCTTTTGATTTCTATTACTGGGCAAACAAACAACCAAACAACTTTCGAGATGAAGATTGTGTTCACACTCTAGGCTTACTTCGTGGCCATGAGTACAAATGGAACGATGTCAATTGTTCGGACTGCCACAAGTTCACTTGCAAGAAAGATTACAATGAGTGCCAAGGATTCTCCCACAACTGTCCAGTGAATGCTACCTGTGTGAACAGTGATGGTTCTTACAGCTGTCGATGCCCTTCTGGATATCGTCTGGATGGAAACAATTGCACAGATGTGGACGAGTGCCAGGTGGGATCATACTCCTGTCATGCAAAGGCCATTTGTGTTAACGTCCCTGGTTCGTACACCTGTCAATGTATTGGCTATAAAGGTGACGGCAAACGTAACTGCGAAGCACCTTTGGTGACAGTTACCACTTCCTGTAGTTTATATAATCGACTGGTGCGTTTGACCAACACAAAAGGTGTAATACAGACACGCGATGGCTACCACTACCAGAATAATGTTGATTGTCGATGGAATTTGTCTTCAAACACATTGCTGCAACTCCAATTTGCAAGTTTTAAAACGTATTCATCCGCCGACTACTTAACCATCTACGATGGCGAGTCATCGTCTGCTCCTCTGATTGGTCGATTTAGTGGAAGCTCTCTCCCTTCCCCCATCGTAAGTTCTTCTAACAAACTTTATTTGCAATTTACATCGGATGGCTCAAATCAAGATAACGGATTCAAAGCATTTTACAGAGCTATCACAACAGGCAGCCTCCGTTTGAGTGGTAATTCGTTAGCCGCGGGTAGAGTAGAAATATTCTATGATAATCAGTGGGGCACTATTTGCGACGATGCCTGGGATATAAACGATGCCAACGTGGTCTGCAGACAGCTTGGTTTCCCCGAAGCTTCACGAGCCTTCCGTGGCGCGTATTACGGCCAGGGGTCCGGTCCGATTTGGATGGATGATGTGGCCTGTTCAGGAAGCGAGTCCCATCTTTACGACTGCAGACACCGTGGATGGGGAAACCATGACTGCACTCACAGCAGAGATGCCAGTGTTGAGTGCCTTCCTATCCGTTTAGCAAATGGAGGAGCTAACTACGGCCGTGTTGAGGTTTTTTACAAAGGAATCTGGGGCACAGTGTGTGATGATGCATGGGATATCAATGATGCTCACGTGGTGTGTCGTCAGCTTGGTTTTCCTAGTGCCTCTTCCGCTGAATGCTGTGCACGATATGGTCAGGGATCTGATCCCATCTGGATATATCATGTCGGTTGCAGTGGAGGAGAAGCTTCGATATTTGATTGCTCTCATCGAGGCTGGGGAGTGGTCAACTGCAATCATGATGAGGATGCGAGTGTAATTTGTAACACTTAG

Transcript

ANN15900-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q95218	Scavenger receptor cysteine-rich domain-containing protein DMBT1 OS=Oryctolagus cuniculus OX=9986 GN=Dmbt1 PE=1 SV=2
Q9UGM3	Scavenger receptor cysteine-rich domain-containing protein DMBT1 OS=Homo sapiens OX=9606 GN=DMBT1 PE=1 SV=2
Q60997	Scavenger receptor cysteine-rich domain-containing protein DMBT1 OS=Mus musculus OX=10090 GN=Dmbt1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000073 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09458 all species →	H_lectin	H-type lectin domain	Domain	Interproscan
PF07648 all species →	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF00530 all species →	SRCR	Scavenger receptor cysteine-rich domain	Domain	Interproscan
PF00431 all species →	CUB	CUB domain	Domain	Interproscan
PF00059 all species →	Lectin_C	Lectin C-type domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037221 all species →	Homologous_superfamily	H-type lectin domain superfamily	Interproscan
IPR019019 all species →	Domain	H-type lectin domain	Interproscan
IPR016186 all species →	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR036772 all species →	Homologous_superfamily	SRCR-like domain superfamily	Interproscan
IPR000859 all species →	Domain	CUB domain	Interproscan
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan
IPR050686 all species →	Family	SRCR-S1 Scavenger Receptor	Interproscan
IPR001190 all species →	Domain	SRCR domain	Interproscan
IPR017448 all species →	Domain	SRCR-like domain	Interproscan
IPR018378 all species →	Conserved_site	C-type lectin, conserved site	Interproscan
IPR002350 all species →	Domain	Kazal domain	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR001304 all species →	Domain	C-type lectin-like	Interproscan
IPR035914 all species →	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan
IPR036058 all species →	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48071 all species →	SRCR DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN15900-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.