Gene detail

Detailed information of ANN15952-RA in Leptoseris scabra

Genomic Location: Scaffold_10__2_contigs__length_57677642:16787027...16797948
NR annotation: KAJ7351687.1, hypothetical protein OS493_036102 [Desmophyllum pertusum]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q27403	Transcription factor glial cells missing OS=Drosophila melanogaster OX=7227 GN=gcm PE=1 SV=2
Q9VLA2	Transcription factor glial cells missing 2 OS=Drosophila melanogaster OX=7227 GN=gcm2 PE=2 SV=4
Q9Z288	Chorion-specific transcription factor GCMa OS=Rattus norvegicus OX=10116 GN=Gcm1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009071 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03615 all species →	GCM	GCM motif protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036115 all species →	Homologous_superfamily	GCM domain superfamily	Interproscan
IPR039791 all species →	Family	Chorion-specific transcription factor GCM	Interproscan
IPR043021 all species →	Homologous_superfamily	GCM, small domain	Interproscan
IPR043020 all species →	Homologous_superfamily	GCM domain, large subdomain	Interproscan
IPR003902 all species →	Domain	Transcription regulator GCM domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12414 all species →	GLIAL CELLS MISSING RELATED/GLIDE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001228 all species →	Molecular Function	DNA-binding transcription activator activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0042063 all species →	Biological Process	gliogenesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN15952-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.