Genomic Location: Scaffold_10__2_contigs__length_57677642:19182895...19188692
NR annotation: CAH3133357.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families
| CDS |
| ANN16046-RA |
| Transcript |
| ANN16046-RA |
| Protein |
| ANN16046-RA |
| UniProt accession | Description |
|---|---|
| Q7ZW47 | Double-stranded RNA-binding protein Staufen homolog 2 OS=Danio rerio OX=7955 GN=stau2 PE=2 SV=2 |
| Q5M7M7 | Double-stranded RNA-binding protein Staufen homolog 2 OS=Xenopus tropicalis OX=8364 GN=stau2 PE=2 SV=1 |
| Q8CJ67 | Double-stranded RNA-binding protein Staufen homolog 2 OS=Mus musculus OX=10090 GN=Stau2 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002781 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00035 all species → | dsrm | Double-stranded RNA binding motif | Domain | Interproscan |
| PF16482 all species → | Staufen_C | Staufen C-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR014720 all species → | Domain | Double-stranded RNA-binding domain | Interproscan |
| IPR032478 all species → | Domain | Staufen, C-terminal | Interproscan |
| IPR051740 all species → | Family | Double-stranded RNA-binding domain-containing protein | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46054 all species → | MATERNAL EFFECT PROTEIN STAUFEN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003725 all species → | Molecular Function | double-stranded RNA binding | Interproscan |
| GO:0003729 all species → | Molecular Function | mRNA binding | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0007281 all species → | Biological Process | germ cell development | Interproscan |
| GO:0008298 all species → | Biological Process | intracellular mRNA localization | Interproscan |
| GO:0010494 all species → | Cellular Component | cytoplasmic stress granule | Interproscan |
| GO:0035418 all species → | Biological Process | protein localization to synapse | Interproscan |
| GO:0043005 all species → | Cellular Component | neuron projection | Interproscan |
| GO:0043025 all species → | Cellular Component | neuronal cell body | Interproscan |
| GO:0098964 all species → | Biological Process | anterograde dendritic transport of messenger ribonucleoprotein complex | Interproscan |
| GO:1990124 all species → | Cellular Component | obsolete messenger ribonucleoprotein complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K17597 | STAU; double-stranded RNA-binding protein Staufen | - | Messenger RNA biogenesis | ko03019 | deepkoala |
Genes whose expression across the transcriptome samples of Leptoseris scabra tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Leptoseris scabra, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
