Detailed information of ANN16145-RA in Leptoseris scabra

Genomic Location: Scaffold_10__2_contigs__length_57677642:21613654...21625336
NR annotation: XP_027047500.1, very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2-like [Pocillopora damicornis]
Species Leptoseris scabra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9D3B1Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 OS=Mus musculus OX=10090 GN=Hacd2 PE=1 SV=1
Q6Y1H2Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 OS=Homo sapiens OX=9606 GN=HACD2 PE=1 SV=1
Q5RBK3Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 OS=Pongo abelii OX=9601 GN=HACD2 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008596 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04387
all species →		PTPLAProtein tyrosine phosphatase-like protein, PTPLAFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007482
all species →		FamilyProtein-tyrosine phosphatase-like, PTPLAInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11035
all species →		VERY-LONG-CHAIN (3R)-3-HYDROXYACYL-COA DEHYDRATASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0018812
all species →		Molecular Function3-hydroxyacyl-CoA dehydratase activityInterproscan
GO:0030148
all species →		Biological Processsphingolipid biosynthetic processInterproscan
GO:0030176
all species →		Cellular Componentobsolete integral component of endoplasmic reticulum membraneInterproscan
GO:0030497
all species →		Biological Processfatty acid elongationInterproscan
GO:0042761
all species →		Biological Processvery long-chain fatty acid biosynthetic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10703HACD, PHS1, PAS2; very-long-chain (3R)-3-hydroxyacyl-CoA dehydrataseEC:4.2.1.134
Lipid biosynthesis proteinsko01004deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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