Gene detail

Detailed information of ANN16181-RA in Nanomia septata

Genomic Location: chr3:135045125...135047572
NR annotation: XP_047130701.1, protein Aster-B [Hydra vulgaris]
Species Nanomia septata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN16181-RA

ATGACTCAACCGAAGATTTATGTTGATTCACAAAGATCAAGAATAAATGGCGATGAGACTTCATGCACTGGGAAAGATGGATCACAAAACGACTCTGTTACTAAGAGTAACGATTCAAAACGATCATCTATGATCAGTGAAAATGGAAAAGCAAACATTCCTTTAGAAGACCTGAATAATTTATATGAGAACGACGAAAAAGGATTGCTGCCTAACTACGCAGTCGAAGCTTCGGATGATGAACTGTCTCAATTAACTAATTCAAATTCCATCAGTAATCATGCTGATCTGAGTAATGAAAGTATTTCTGAGAGTCAATTACTCAGCTCTCACGATAAGATAGACACTGTTGGAAAAAAGCCTAAAAAACAGAAGAAGAGAAACCGTATCGGGCAAATGATATCTGGTGTCACTCATAAATCGAAATCAGAATTATTTCAAAGGTTATTTAAGGAGAAAGTGCCTGGAGAAGTACTTGTTTCTGATTACTCCTGTGCACTACAAAGAGATATATTAGTACATGGTAGATTGTATCTTTCTCAAAATTGGCTTTGTTTTTATGCAAATATATTTGGTTGGGAAACACTCGTTACCATTCGTTGGGTTGATATAActgcaataacaaaagaaaagACAGCAAAGTTAATTCCGAATGCTATACAGGTCTTTACTGATACAGATAAGTACTTTTTTTCAACGTTTGTTACTCGTGAAAATGCATACACTGCTTTATTTCGAATCTGGCAAAACGCATTGCTAGGTCAACCTACTCTTCCTGCTGATCTGAAGAATCAATGTAGGAAACGAAATTCAGCGTCTCGGGATGCAGTCGATGGAATTCCTCTTCATGACGAGGTCGAAGAAACTGGCGACGAAATGGTCGAGTTTGACGACGATAAGTCTTTAACTAGTAATGCTGATTCTGTAGCAACAAATGGGCTGGATAATGCTGGTCTTGAGACTGCTTCGGTTTATAGTGGAGCTGGTAGCATACCATATGAAGTTGAAAGCCTTGTAAAAACTCATAAGAAGAGTGCAAGTATTGTTGTTAACCAAGACGAGAAAAATCCTACCATCACAAATGAAACTAATTCAAAATCCTCGGATAAAAATGGTACTAGTACATCATCGTCAGATGTGAAACAAAACGGCAGTTCTCCGGCTTCTCCATCAGAAAAATCACCATCGAATTTGAGTGCTAGAAAGAAAATTAAACCGAAACCAAAAACAATGCCTATTCCATCATATCATTTAAAAATACCCAATGGTGAAGAGGAATCAACAACTGATGATAATGATTCTGATGAGGAAGTAACAGCAGAACAAGATGATGATGTTTTATGTCCGTGCCATGACGCTCACGAAGGGAAGGAATACGTCAACGAAGAATTTAATTTCGATGTTGATGCATTATATGAGCATTTGTTCTCTCAGGAGTCTGATATGATGAATGGTATTTTCGAACAGAGAAAATTCGAGAAAGTTAAATATACACCTTTCAAACGAGAAGAGGATGGCTCACATTTCCAAATATTAGCGTATACCATACCGCTGAACTATAGCATAGGTCCCAAACAATGTCATACAGTTACTAAGCAACTCATGCAGAGAGAAAACACTGTTGGTTCTTTTTATGTTGTGAAAACAGAAAGTACAACGTTAGGTGTTCCCTATGGGGACAGTTTTCATGTTAATACACAATACTGTATTACAAGAGCGGCTGGGAATCGATCTAGATTGCGTGTTACAACAGAAATAAAATATGTTAAGAAAGTATTTGGACTTGTGAAGAATATGGTTTCGAGAGCAACCGATGAAGCTTTTAAAGATCATATAAACTTTGTTGTGAATATTCTGCGATCTGAATCAGATTTACTCTCATTTAAGGAAGTCAAACCAACAAAAACGAAACTGACCAAAACGAAATCTATTGAGTCTGCGAAATCTATAAAACGTGAAACGCCTAGGCAGGAAAAAGTTGTTAGTCATAATAAATTACAGACCACCATTTTACAGAAGAAACCTGTGGAAGAAAGTGGTTGGCAAGTAAAAAAATCATCGCTGCGTGGATTTGCCATAAtgttttgtttattgtttttaATGAATGTGTACATGTTGAGTCGGTTACGTGCCTTAGAGAAAAACATTTTAGTTAGTAAAGAAAATCAGCTATCGAATGAACTACCCACGACGAAAGAGGAATGGAATAATTTACTAATGCATCAGAAGAATTTACATGAACTTGAACTTTATAAACTGAAAGAGGTTATTGGTAATACAGCAGCGCTTCTTGAGCAGGTACAGCTCTCAATTAAACACCTGCATGATGATATAAAACAGAGCATCATCAAAGGTCGATCTGGTGTAAAGGAAGTAAAAGAAATTAAGGAAGATGCTGATGTAGTGATCGCAGATGATAATGATATGAATAGAAAAGAAGAGCTATGA

Transcript

ANN16181-RA

ATGACTCAACCGAAGATTTATGTTGATTCACAAAGATCAAGAATAAATGGCGATGAGACTTCATGCACTGGGAAAGATGGATCACAAAACGACTCTGTTACTAAGAGTAACGATTCAAAACGATCATCTATGATCAGTGAAAATGGAAAAGCAAACATTCCTTTAGAAGACCTGAATAATTTATATGAGAACGACGAAAAAGGATTGCTGCCTAACTACGCAGTCGAAGCTTCGGATGATGAACTGTCTCAATTAACTAATTCAAATTCCATCAGTAATCATGCTGATCTGAGTAATGAAAGTATTTCTGAGAGTCAATTACTCAGCTCTCACGATAAGATAGACACTGTTGGAAAAAAGCCTAAAAAACAGAAGAAGAGAAACCGTATCGGGCAAATGATATCTGGTGTCACTCATAAATCGAAATCAGAATTATTTCAAAGGTTATTTAAGGAGAAAGTGCCTGGAGAAGTACTTGTTTCTGATTACTCCTGTGCACTACAAAGAGATATATTAGTACATGGTAGATTGTATCTTTCTCAAAATTGGCTTTGTTTTTATGCAAATATATTTGGTTGGGAAACACTCGTTACCATTCGTTGGGTTGATATAACTGCAATAACAAAAGAAAAGACAGCAAAGTTAATTCCGAATGCTATACAGGTCTTTACTGATACAGATAAGTACTTTTTTTCAACGTTTGTTACTCGTGAAAATGCATACACTGCTTTATTTCGAATCTGGCAAAACGCATTGCTAGGTCAACCTACTCTTCCTGCTGATCTGAAGAATCAATGTAGGAAACGAAATTCAGCGTCTCGGGATGCAGTCGATGGAATTCCTCTTCATGACGAGGTCGAAGAAACTGGCGACGAAATGGTCGAGTTTGACGACGATAAGTCTTTAACTAGTAATGCTGATTCTGTAGCAACAAATGGGCTGGATAATGCTGGTCTTGAGACTGCTTCGGTTTATAGTGGAGCTGGTAGCATACCATATGAAGTTGAAAGCCTTGTAAAAACTCATAAGAAGAGTGCAAGTATTGTTGTTAACCAAGACGAGAAAAATCCTACCATCACAAATGAAACTAATTCAAAATCCTCGGATAAAAATGGTACTAGTACATCATCGTCAGATGTGAAACAAAACGGCAGTTCTCCGGCTTCTCCATCAGAAAAATCACCATCGAATTTGAGTGCTAGAAAGAAAATTAAACCGAAACCAAAAACAATGCCTATTCCATCATATCATTTAAAAATACCCAATGGTGAAGAGGAATCAACAACTGATGATAATGATTCTGATGAGGAAGTAACAGCAGAACAAGATGATGATGTTTTATGTCCGTGCCATGACGCTCACGAAGGGAAGGAATACGTCAACGAAGAATTTAATTTCGATGTTGATGCATTATATGAGCATTTGTTCTCTCAGGAGTCTGATATGATGAATGGTATTTTCGAACAGAGAAAATTCGAGAAAGTTAAATATACACCTTTCAAACGAGAAGAGGATGGCTCACATTTCCAAATATTAGCGTATACCATACCGCTGAACTATAGCATAGGTCCCAAACAATGTCATACAGTTACTAAGCAACTCATGCAGAGAGAAAACACTGTTGGTTCTTTTTATGTTGTGAAAACAGAAAGTACAACGTTAGGTGTTCCCTATGGGGACAGTTTTCATGTTAATACACAATACTGTATTACAAGAGCGGCTGGGAATCGATCTAGATTGCGTGTTACAACAGAAATAAAATATGTTAAGAAAGTATTTGGACTTGTGAAGAATATGGTTTCGAGAGCAACCGATGAAGCTTTTAAAGATCATATAAACTTTGTTGTGAATATTCTGCGATCTGAATCAGATTTACTCTCATTTAAGGAAGTCAAACCAACAAAAACGAAACTGACCAAAACGAAATCTATTGAGTCTGCGAAATCTATAAAACGTGAAACGCCTAGGCAGGAAAAAGTTGTTAGTCATAATAAATTACAGACCACCATTTTACAGAAGAAACCTGTGGAAGAAAGTGGTTGGCAAGTAAAAAAATCATCGCTGCGTGGATTTGCCATAATGTTTTGTTTATTGTTTTTAATGAATGTGTACATGTTGAGTCGGTTACGTGCCTTAGAGAAAAACATTTTAGTTAGTAAAGAAAATCAGCTATCGAATGAACTACCCACGACGAAAGAGGAATGGAATAATTTACTAATGCATCAGAAGAATTTACATGAACTTGAACTTTATAAACTGAAAGAGGTTATTGGTAATACAGCAGCGCTTCTTGAGCAGGTACAGCTCTCAATTAAACACCTGCATGATGATATAAAACAGAGCATCATCAAAGGTCGATCTGGTGTAAAGGAAGTAAAAGAAATTAAGGAAGATGCTGATGTAGTGATCGCAGATGATAATGATATGAATAGAAAAGAAGAGCTATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3KR37	Protein Aster-B OS=Homo sapiens OX=9606 GN=GRAMD1B PE=1 SV=1
Q80TI0	Protein Aster-B OS=Mus musculus OX=10090 GN=Gramd1b PE=1 SV=2
Q8VEF1	Protein Aster-A OS=Mus musculus OX=10090 GN=Gramd1a PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001069 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02893 all species →	GRAM	GRAM domain	Domain	Interproscan
PF16016 all species →	VASt	VAD1 Analog of StAR-related lipid transfer domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004182 all species →	Domain	GRAM domain	Interproscan
IPR031968 all species →	Domain	VASt domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR051482 all species →	Family	Cholesterol transport domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23319 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0032366 all species →	Biological Process	intracellular sterol transport	Interproscan
GO:0032934 all species →	Molecular Function	sterol binding	Interproscan
GO:0120015 all species →	Molecular Function	sterol transfer activity	Interproscan
GO:0140268 all species →	Cellular Component	endoplasmic reticulum-plasma membrane contact site	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN16181-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.