Gene detail

Detailed information of ANN16387-RA in Leptoseris scabra

Genomic Location: Scaffold_10__2_contigs__length_57677642:28302429...28308753
NR annotation: XP_020602569.1, extended synaptotagmin-2-A-like [Orbicella faveolata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN16387-RA

ATGGCGGAGATTCCTGAGACAGCAGCGGCCGCTCCGAAACCAGCTTACAAGAGGATCTTATACAACTTGCAGCATATTTCTCGTGATCAGAGCAAAGAGCTGTTGCTGTATTTTGGTGTTACGCTGTCGCTGTGGCTGGTCGGCCATTTTCATTTCAGCTTCGCGTGGATTATCATGATCCTCATGATTTTTGTAAGCTGGGAGTTTCAAATGGAACAGAAGCAGAAACGTAGAGACCGCATGGAGAAGGCAGTGAAATCTTCTTTTATCGACAAGATAGAGAACCTGCCCTCGTGGGTTTATTTCCCTGAAAAAGAGCAAGCGGAGTGGGTGAACCGCATTATCGATCAAATGTGGCCTTACGTGGGCGAAATGGTCTACAAAATCCTCAAGGAAAGTGTCGAGCCAGAAATGCAGAAAAATATGCCCAAAGCCCTGAACACGCTTTATTTCGAAACTATCGACCTCGGGAATAAGCCTCCATACGTGGCAAACGTCACCTCTTATGTCAGTAAGAACGAGAACAAGAAATCGGAATTTATCTTCGACATGGATTTGTGTTACAATGGCGACGCGACCATTAAGCTGGCGGTCAAGAGAGTGAAGCTTGGGCTGTCGAATATTGAACTTCGTGGAATTCTGAGGGTAATTTTCAAGCCCCTTGTTGCTGAATACAATCCTGTCGGCGGCGTGACCGTATTTTTCCTGAACAGACCCAAGCTGAAATTCGACTTGACCAATTTACTGAACGTTCTCGATCTCCCTGGACTCAAGAGCTCCCTGCGCCGAATCACGGATGATGTCATTGCTTCGTTTGTTGTGCTACCGAACCGTATTGCTATCCCCCTCGCTCCTGGAGTGGATGCCAGCGATCTGCAGTACCCGATCCCCGAAGGTGTCCTTCGTGTCAAAGTCGTGGAAGCAAAGAACCTGCTCGCTAAAGATTTTGGCCTGGTGAAGAAAGGAAAATCTGATCCATATGCCATTATTCGCGTCGGTGCTCAAAGCTTTCGTACTAAAGTCATCGAAAATGACCTCAACCCGGAGTGGAACGAGACCTTTGAAGCGTTCGTGGACAACTCCGAAGGGCAGGAGCTGGAGGCAGTGATTTACGATGAAGACACCTCCTCGAAAGACTCCAAGATTGGCACGCTCGACACCGATATAGCTTCCACCGTGGAGACAGGTTACCGCGATCTGTGGTTGCCTCTTGAGGGGGTGAAACAAGGGAGGGTTCATTTCCAGATGGTATGGTTCCCGCTCAGCTCCTCCCCTTCAGATCTAGCCCCACCGCCAGAAAAGGGACTTTCTGTGGCTGCGCTCTTTGTCAAACCCATCTCAGCATCCGCGCTGCCACTGACCTGCGGTCAAAAGGAAGCCTTACGGAGCATCTACTGCGAGATAACTGTGGGGAAAACCACTCGACAGACCTTCCAGTGCACTGGAGAGAAGACGGAGTGGAAACAAGCTCTGCGCTTCCTCGTGGGTGATCCCGAGGGACAGGAAGCGGAAGTCAAAGTGATTGAAGCCAAGGGAACCAAGTCGTTGGGCCGGATGTCCTTCAATATCCGCAGTTTGCTGAACAAACCAGGCCTGACCATGGAAGAGGTGTTCCCGCTGGAGAAATCAGGCGACAAAAGCACCCTGACTTGCCGCTTTACGCTGAGGGTCTTTAAACCGAGATGTGAAACTGGCAGCACAGAAGTTGATTCCGGTATCAAGAGACCGGAGTCCACTCCAATCCCAACTGTTATTGTAAGCGGAGACAGTGCGGACGAACAACCGGAAGAGAAAGAACACGACAGAGATTCGGACACCGGAAGTGTGTACGACGGGAGTATATACGGTGCTGACAGTCACCACGAGGACTCCACGGAGGACCTTGCCAGCAAGGGGCACTTGGACCTGCAGTTAAAGTATAACCATTTGAAGAACCGTCTTTACGTCACTGTCAAAAGCGTCAAAGTCCTCGCGTCACATGACCCACCAAGCAAGATCAATCCACTGGTCCGTCTGTACTTGTTACCAGACCGCTCCAAACGCACCCGGCGCATCACCAGGGAACTGAAGGGAACCTTGGAAGGAGTGTTCAACGAGACCTTCGAATACATCGTGGGTCTTGATCAACTGCGGAGCATGCAGATAGATATAGCTGTGAAGAGTGATCACGGCTTCACATTTGGGCGCGCCCGCAATCGTCTGATTGGAACAGCGGTGGTGGATTTGTCACAGAAGGCACTCACGGAAGGGTGTGATGTGACTTGCGAGCTGAGAAAGTTTAGTCTTACATTTTGA

Transcript

ANN16387-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5M7N9	Extended synaptotagmin-3 OS=Xenopus tropicalis OX=8364 GN=esyt3 PE=2 SV=1
Q5RAG2	Extended synaptotagmin-1 OS=Pongo abelii OX=9601 GN=ESYT1 PE=2 SV=2
Q3U7R1	Extended synaptotagmin-1 OS=Mus musculus OX=10090 GN=Esyt1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001220 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17047 all species →	SMP_LBD	Synaptotagmin-like mitochondrial-lipid-binding domain	Domain	Interproscan
PF00168 all species →	C2	C2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR039010 all species →	Domain	Synaptotagmin, SMP domain	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR051634 all species →	Family	Extended Synaptotagmin	Interproscan
IPR031468 all species →	Domain	Synaptotagmin-like mitochondrial-lipid-binding domain	Interproscan
IPR037733 all species →	Domain	Extended synaptotagmin, C2A domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45761 all species →	EXTENDED SYNAPTOTAGMIN-LIKE PROTEIN 2, ISOFORM C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005544 all species →	Molecular Function	calcium-dependent phospholipid binding	Interproscan
GO:0008429 all species →	Molecular Function	phosphatidylethanolamine binding	Interproscan
GO:0031210 all species →	Molecular Function	phosphatidylcholine binding	Interproscan
GO:0031227 all species →	Cellular Component	obsolete intrinsic component of endoplasmic reticulum membrane	Interproscan
GO:0031234 all species →	Cellular Component	extrinsic component of cytoplasmic side of plasma membrane	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0008289 all species →	Molecular Function	lipid binding	Interproscan
GO:0006869 all species →	Biological Process	lipid transport	Interproscan
GO:0061817 all species →	Biological Process	endoplasmic reticulum-plasma membrane tethering	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN16387-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.