Gene detail

Detailed information of ANN16543-RA in Leptoseris scabra

Genomic Location: Scaffold_10__2_contigs__length_57677642:31270373...31289596
NR annotation: CAH3014731.1, unnamed protein product [Porites evermanni]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN16543-RA

ATGGCGTCGACGGCGACAAAAATATTTTCTCGTTGTTCACGTTGGTTTAGTAAATGCAGTATAATTTCGCCGTCACCAAGAAAAGCTCGCGTTTTTCCACAAGTGAAGCCCCTTTTCAGAGCATGTGGTGTTTTTTGTAACGATTCTGTGACAGAAAATGGTTCTCGCGATCGCAAGACAGAAAATTTTCCACAAAAGACTCACGTGCGTAATTATGCACTTTTGTTTGGGTTACCATTTGCTGTTTTGGTTTCCACTGCTGTTTCAAGTCCTACTGCATTCTGTGGAAATGAAGATGATACTCCCGTGAAAGCAACGACGACGTCTGCAAGCTTTATTTTTTCTCGAGCACGAAAAGCTGAGAAAAGAAAAGCACAAACGGAGAGAGCACGAGGTGAAATATGTAAACGCCGACTATTTGAAGAGGATGCAGAAAACCTGACCCCACCTGCAGTCCTGATCGAGCCTCGTATCCTACGAGAAAACCCTCCTCAAAGACGTATTGAAGATCTGGTGTTCAAGACTTTCCCATCAGATATAATTATCATAATAATATTCAAACACATCATTCATGATGGACTGCTGACAGATAACGACAGTTTACAGACAGAGAAGATGGCTATAATGAGATCTGTAGGACCTCTTTCTCTCTCGAATGCTGTGAAGGAAATAAAAGAAGGAAGTGCAAGCATTATATCGATTGTATGTGAAGATTGTGGGACACAAAATAAAGTAGTTACATGTGAGCAACACCGATATGGGAAGCGAGGCCCAAAAGCATATGATGTCAACACAAGAACTGCACTTGGTGCCATTGACAATGGTATCGGTTTTACCCACATGAACAATTTTCTGACAACACTAAATTTGCCAACGCTGAACAAAAGTGCCTATAAAAAGAGGGAGAGAGAAGTTGGGAGGGCCATTGAAGAAGTTGCTTCAAACTCCTGTGAAATGGTTTTACAGGATGAAATCAATGCTGCAGAGGAAAATGGCAAAATTCCTGATACCGATGGCCTTATGCCATTGTCTGTATCATATGACATGCAGTGGTTAAAAAGGGGCAGGGCAAACAATTCATTAACTGGACATGGGGCCATTATAGGGATGGAAACCAAGAAAATTCTAGACTATGAGTGCGCAAATAAGTTCTGTAGAGTCTGCGCAGCAGCCAATTCAAAAGGCAAGCAACCTGTTTCTCATGATTGTCGAATGAACCATTCAGGCTCTTCAAAAGCCATGGAAGCAGCTGTGGCTGTGCAGCTTTTTTATCAAGCACCCAAACATGGAGTTAAGTACTCAGTGTTTATCGGTGATGACGACAGTGCAACAATTGCAAAAATTCGAGAAGAAGTACACTATAAAGTGGATAAGTGGTCTGACACAAGCCATGCAACAAGGACAGTTGTAGGGCATTTACAAAAGATCAGTTCTGAAAGAAAAAAACAACCAGGAGAATCACCTCTTTCCCAGAAGATATATGCAAGTGACCTTGTAGTTAACAAACTGGTCGCAAATGCTTCTTCGCAAGTTAATGAGAGCTGGCACAGTACTGTTGGTTTAAAAGCGCCCAAAATCCGCTTTTATGGTGGGAGCGAAAGTTCTGACCAAAGGGTTGCGTCTGGTGTTGCACAAACAAACTTGGGGAAACAATATTTACTAGATACCCTACGCTGTCTAGATGTAGAACCAGGAAATATTATGGAGACAAACATTTCAGCAATGGACAAAGAAAGGGAAGCTGAAAAAAGAAGAAAGTCCTCGGTTGAATTCAAGAAACGACGAAGAGAGAATTTTATAAAAAAGAAAGCGAGAAATCAATCCGATCAAAACAAAGAAGGAGTTACTTACCAAAGTGGGGTGTCACTAACACTTGACCCCCAGCTCGTTGAACAAGCCACTGGTGTCACAAAGGAACGATTAAAACAGTTCGAGAAAGAGGTCCCTACTTTTACTAAGCGACCAACCAAAAAAATCTTCACTTCCTATGCGGATCATCCAAGCACAAATTTGGCTATAATTTCATTTGACACTGAAACAACTTGTGGAGGAAAAGAAGCCGAGATTATCCAATTAGCAGCACAAAATGAACTGGGTCAAACATTTTCAAGGTTTGTTCTGCCAACAAAAGACATTTCTTTTCGTGCGTCCAGGATAAATAAATTTCAACTAACAACAATCGGCGGCAAGAAAATTCTTCACCGTAGTGGAATCCGCTTGGAGACCGTTTCACAAGCCGAATGTCTTGAGTTGTTTGTTAATTTTATAGCGGCGTCTAAAGACCAGACAAATGATACAACAGTCATCCTGATCGGCCACAATTCCTGTTCATTCGACACTCCCGTGTTTCTGAGAACTGTGCTGCACTATTCGCCACATCTAATCCCTGAAATGAAGGCACTAAACGTCCATTTTGCTGACAGCCTTGCCTTCGTTCGCAAGCTCATCCGAGAGAAATGCGAAGCGCTAAAAACCGAAGACGGGTCATTTGTGAAACCAAACCAAGCTGCTATATACAGAATTTTATTTAATGAGGACTTCGAAGTCCATGATGCTCTTGAAGATGTTAAAGCGTTGCACAAAATTCTTCTACACTCTCCTCTTGGCGCCTCCGTGTGCGATATTGTAAACAACAGCCAGACAACGACGCTCGAATCAGCAGTAGAACAAATGCTCTATCTTGACCACAGTTATTCTCTCCAACAATCCTTCCAAGGAACCCTCTGCAATTCCCGTAACACTGGCATTATCAAAAATGGATTAGCGAAGAAACTGGCTGACTCTGGCAACGGCTACGAACACCTTCAACACGTGTTTGACAAACATGGCGAACAAGGCCTCCTTGCAATCCTGACCAATCCAGCAACATCATCAGGCAACTCGCCCACTCGTCGCACTCCTCGTGGCACTACTGATCCAGTTGTCCTTCATCGCATCATCATAATTTATTCTATCAGGGTGACCAATGATCTGTTTCACAACAGTAAGTTAAATTGTAGCACTGGTAATTGCACTTGCTGGTCAGTCTCCTCACCAGAGTTTCGGGCAGGAATTATGAGGAAGATTGCAGACCTTATTGAGTCAAAGCTGGATGAGTTTGCTGAGGCAGAATCCAGAGATCAGGGCAAACCAGTATTGCTGGCTAAAACAGTGGATATCCCACGTGCTTGTCTTAACTTCAGATTCTTTGCCTCAACAATTATAAGTGCTTCATCTTCAAACCATGCCAGTGTTCTTGACAAAGTAGGTGCAGTGAACTATTGTATCAGATGTCCAATAGGCATAGCTGGTCTCATCTCCCCATGGAACCTGCCTTTGTACCTCTTAACATTTAAAATTGCTCCTGCTATCGCTGCTGGAAACACTGTTGTGTGCAAACCAAGTGAGATGACATCAGTTACAGCATGGATGATGGCAAAGTTGATGAATGAGGCAGGACTACCTCCTGGAGTTTGTAACTTTGTGTTTGGCACTGGGCCAAAGGCTGGAGCTGCTATTGTGAAGCATCCTGACATACCAGTTATTTCATTCACTGGCTCAACTACTACAGGTCAGGCCATCACACAAATGAGTGCTCCATTCTACAAGAAGCTGTCACTGGAACTTGGAGGGAAAAATGCTGCTATAATCTTTGATGATGCTGATCTGGAAAAGTGTATAGCAACAACTATTAGATCCAGTTTTGCAAATCAAGGAGAGATCTGTCTGTGTACAAGTAGAGTATATGTTCAAAAAGGAATTTATGAAACGTTTTTAGAGAAGTTTGTGGAAAAAACCAGACAACTTAAAGTTGGTTCACCCAAGGATGCAGCAACAAATCTTGGAGCATTAATTAGCAAGGAGCACTTAGCTAAGGTGCTGGGATATGTAAAGCTTGCCGTGGAGGAAGGTGGAGAAATTGTGTGTGGTGAAGGAAAAGACGCACCACTGAAGCTTTCAAGCCCTCATACAGAGGGATATTTCATGCGACCCACAGTCATCAGTGGCTTGGCCGACACCACTCGCTGCATGCAAGAAGAGATATTTGGTCCTGTGGTGTCCATTGTACCTTTTGATTCGGAGGAAGAGGTTATCAAGCGAGCTAATGGGGTGCAATACGGATTAGCTGCGGTAGTGTGGTCAGAAAATCTCTCTCGGACACATCGCGTATCGCGACGGTTACAGGCTGGTACTGTGTGGTGTAACTGTTGGCTCGTTCGTGACCTCAACATGCCGTTCGGTGGTGTCAAGGCCTCGGGTATTGGCCGGGAAGGAGCTAAGGAGTCTTACGAGTTCTACACAGAAGCTAAAACAATCTGCGTTAAGATATAG

Transcript

ANN16543-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q66I21	2-aminomuconic semialdehyde dehydrogenase OS=Danio rerio OX=7955 GN=aldh8a1 PE=2 SV=1
Q9H2A2	2-aminomuconic semialdehyde dehydrogenase OS=Homo sapiens OX=9606 GN=ALDH8A1 PE=1 SV=1
Q0P5F9	2-aminomuconic semialdehyde dehydrogenase OS=Bos taurus OX=9913 GN=ALDH8A1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000397 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20700 all species →	Mutator	Mutator-like transposase	Domain	Interproscan
PF00171 all species →	Aldedh	Aldehyde dehydrogenase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029510 all species →	Conserved_site	Aldehyde dehydrogenase, glutamic acid active site	Interproscan
IPR016160 all species →	Conserved_site	Aldehyde dehydrogenase, cysteine active site	Interproscan
IPR016162 all species →	Homologous_superfamily	Aldehyde dehydrogenase, N-terminal	Interproscan
IPR016163 all species →	Homologous_superfamily	Aldehyde dehydrogenase, C-terminal	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR049012 all species →	Domain	Mutator-like transposase domain	Interproscan
IPR016161 all species →	Homologous_superfamily	Aldehyde/histidinol dehydrogenase	Interproscan
IPR015590 all species →	Domain	Aldehyde dehydrogenase domain	Interproscan
IPR013520 all species →	Domain	Exonuclease, RNase T/DNA polymerase III	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43720 all species →	2-AMINOMUCONIC SEMIALDEHYDE DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0016620 all species →	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN16543-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.