Gene detail

Detailed information of ANN16860-RA in Leptoseris scabra

Genomic Location: Scaffold_10__2_contigs__length_57677642:36501536...36515532
NR annotation: CAH3181627.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN16860-RA

ATGTTTAAAACTGTGTTGACTTCCGTCAGAGAGAGAAAGAATGAAGCGGGCAGCTCATGTGTTCCTCTCGACGCAGAACGAACTATGAGATTTTTGCGATTTCGAACAGGATCTATACTTCGGAAGTTTATCATTGGATTGCTGGTCTTAAGCGTAGTGTCATGTTGGATTTTAGTCTATCACGCTTCGAGAGAATTCAAAATTGTGCGACGTGCTCCTGTGCTCACAGAAGAAAAATGTTTTCATCCGAGTCGAAGTGGGAGCAGTGCGCGTCTAGGATCTGGAGAATTTCAAGAATCAGGGTACAACGCATCTCACAAACTAGAGAAAAGAGTTCTTATTGCAATCCGCAAAACATCCATAACTTTTCGTGCGCAGATAGCAACTGTTTTAGAAGCGAATCGTTTAGCACATCAATTTGTTTATCTCGAACTAGGAGACAAAACGGTTTTCCCAGAGCTGACGCATTCTGGTGTTGGAAAGTTTTCTGTTGTCATCTTTGAAAGCATCAAGTTCTATTTAGCACTGGGGAAAGCTAAGAAGGAACTGATCGATGATTACTGTAGTAAGTTTGCTGTTGGAATCATTTTATTTACGGAGCAAGAAGCATATGAACCCGATATTCATGCATTCGAAGAATTTCACCTCGCCATTAAGACAGGTGTCAACAACCTTCAAAACGTCGAACTCAATCCATCGGCATGTTTGCTGAGACTAACTCGAGCCGGTGGAATTATCGAGAAACCTCCGAATTTAAAGTGGACCGTTTTCTTTCCTAATCATAGCACCTACGAGGCTGTTGAATTTGCGACCTTGGATGTCACAATTACAACATTACTCTCGGACAAAAAAGGGCTTGCACAAGTCAACTTCGAAAATGCCATCGTCGAAGAAAAGGTCACATCAACGCGATACACAACTGTTCTAACTGACACTGGACATCTCGATGGCGTGCGACGTGTTTATTTCGGAAGTGGTTTGTCATTTTGGCTTCACAAGTTATTGTTCATTGACGCGCTGGCATTTGTCTCAAGAGGGCAGTTTGCTCAGTCACTCGAAAGAAGATTTGTTGTTGATATTGACGATATTTTTGTGGGGAAAACGGGGATTCGAATGACGAAGGAAGATGTTACGGCAATGATCTCTGTTCAAAACAAACTCCAAGAGCGAGTGCCAGGGTTTCATTTCAATCTTGGCTATTCTGGTGGCTACTTCTTACATGGCAATGACGAAGAAGATGAAGGAGACAGGGAACTTGTGAAAAATGCAGACAAATTCTGGTGGTTCAGCCATATGTGGCTTCACAAGAAGGCACATGAAAGAAACACTTTGGAAGAGTTAGTGGAAGATCTCAAGAAGAATTTAGAGTTTGCGAAGGAACATAACATTCCTGTGAATACTACATATGCCGTTGCACCCCACCATTCTGGAGTTTATCCACCCCATGATGTACTCTACGATGGCTGGAAGAAGGTTTACAACTTAAAAGTGACATCAACCGAGGAATACCCTCACTTATATCCAGCTAGGTTCCGTAGAGGATTTGTCTACAAAAATGTCAAGGTTCTCCCTCGTCAAACTTGTGGTCTGTACACCCATAATTTATTCTTGAAGGACTATCCCAAAGGCCAGAAAAGATTAGAAGACAGCATCTATGGGGGTGAACTGTTCCAAGTCGTCGTAGATAATCCTATTTCCATCTTTATGACTCACTTGTCGAACTATGGAAGTGATCGCCTGGCACTGCTTGTGTTTGATAGTCTGACCAAGTACCTTCAATGCTGGACACACCTGAAACTAAGCTCTGAGCACCCTACAGACTTAGCTGAGAGATACTTCAACATGTACCCTGATGAAATGGAGCCCATTTGGCAGAACCCGTGCCGTGACCCACGTCACAAGACCATCTGGAATGCAGAGAAGAGCTGTAAGAGGCTTCCATCGTTCCTTGTAGTTGGTCCTCAAAAAACTGGCACCACAGCACTTCACACATTTCTGAAAATGCACCCTGATATCTTGAGCAGCGAACCAAGTATTAACACGTTTGAGGAGGTGCAGTTTTTCAATGGACACAACTACAACAGGGGTTTGGATTGGTACATGGATTTCTTTCGAGACCTTGGCAACAACAGCAACACTGTCCTATTTGAAAAGAGCGCTAATTATTTTGACAACAAAATGACACCATTCAGGGCTCATGCGCTTCTGCCGGATGCAAAAATCATCACAATCTTAGTGGATCCAGTAAAGAGGGCATATTCTTGGTATCAGCACATGAAGAGTCACGGTGTATCAGCAGCACAAATGCCATTTTACAAAGTTCTGTCAAGTGTTAATTCCACAGAAGGAAGGGAAATCAAAGCTCTTGGCCAGAGATGTTTGATACCAGGGTTGTATGCACAACATCTAGAGAGATGGTTGACATACTTTCCATCTTCTCAGATTCTTATTCTTGATGGAGACAAACTAAGAACTCATCCTGCAGAGGTCATGCTTGAAGTGCAGAAATTTCTTGGCATCAGTGTTTATGACTATAGCAAAAGACTAAGATTTGACAAGCGCAAGGGATTTTACTGTCAAGTAACATCTCAGGGTGGTACACAGTGCCTTGGTAAAGGCAAAGGTCGACACTATGGTCCCATAGATAAAAGGTCTCAGCAATTCCTGGATGATTTCTATAGACAGCCCAACAGAGAACTTGCTGACTTGCTTCAACTGTTTAAAAAACCACTGCCTAACTGGTTAAGACCAAATAGATAA

Transcript

ANN16860-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H3R1	Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 OS=Homo sapiens OX=9606 GN=NDST4 PE=1 SV=1
Q9V3L1	Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase OS=Drosophila melanogaster OX=7227 GN=sfl PE=1 SV=1
Q9EQW8	Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 OS=Mus musculus OX=10090 GN=Ndst4 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002036 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12062 all species →	HSNSD	heparan sulfate-N-deacetylase	Family	Interproscan
PF00685 all species →	Sulfotransfer_1	Sulfotransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021930 all species →	Domain	Heparan sulphate-N-deacetylase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR037359 all species →	Family	Heparan sulfate sulfotransferase	Interproscan
IPR000863 all species →	Domain	Sulfotransferase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10605 all species →	HEPARAN SULFATE SULFOTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015016 all species →	Molecular Function	[heparan sulfate]-glucosamine N-sulfotransferase activity	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0008146 all species →	Molecular Function	sulfotransferase activity	Interproscan
GO:0015014 all species →	Biological Process	heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process	Interproscan
GO:0019213 all species →	Molecular Function	deacetylase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02577	NDST2; heparan sulfate N-deacetylase/N-sulfotransferase NDST2	EC:3.5.1.- EC:2.8.2.8	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.