Gene detail

Detailed information of ANN16870-RA in Leptoseris scabra

Genomic Location: Scaffold_10__2_contigs__length_57677642:36827028...36829322
NR annotation: KAJ7391188.1, hypothetical protein OS493_019319 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN16870-RA

ATGAAAACTCTCTTGTGTTCCGCGTTTCTTCTTGTTACTATTGCAAACAATGTGCTTGATATACATGCTATATCTTCACTTGACGACGAGACATACAGCACTTTTCTTGAGCTACTGAAAGGAGAATTTAATGTCCCATTGCAACAAAGGAGCACGAAGCAGAAATCTGCTATCGTACGCTTTTGGCGGAACCGTGGCCATTTATCTCTTCAAAGAGGCAACGTATGCTTTGATGGTAAGCCAGTTTTACGGAAGTCAACTGTATCGAAAGTAGTAGCGAAAGCTTTCAAAGAAACTAAAGGATCTGGTGTGAGAAAACTCTACCACCATTTAAAAGACGTATGCAGTAGCGTGGGTGAAAGAGATGTAAGATGTGTGCTTGGAAAGTCTCGTCTACATCAACGGCTAAACGTACGATTTCAAAACAAAGCTATTCTAAAGCCAATACGAGCTAGAACTGTCCAATCCCGTCATCAAGTGGACTTAGTAAGTATGGAAAGCACTCCATATGTGCTGTCATTACTGGATGTGTTTAGTCGGTACCACTGGCTTGTTCCACTGGAAGGAAAAAGAAGCAGCTCAATCGCAAAGGCAATGTCTACAATTTACAAAGAGCATGGTCCTCCCCGTGTCCTTCAACATGATCAGGGACGGAAATTCGACGGTGCTGTTAAAAAACTGTGCAATAAACTTGGTATTAAAATAATTAAAGGGCGTCCATACCACCCACAATCACAGGGAAAAATCGAACTGTCCCACAGATCGTTTAAGAAGAAGGTGATGTATGACTTATTGTCTATGAGCAAGACTGGGGTTAACTGGGTAAAATGCTTGCCGGATTATGCAAAAACTTTGAATTGTCAACCAAAGGAGGAGTTATCTTGGAAGTCCCCCTTTGAAGTGTATTACGGACGGAAACCCTTCAGAAAAAATTATATATCAGGGGCTTCTACAGCACAAGAATGGAACGTTGACGAAGAAGAGTACGAACGATTGACGTCGTCGGTTCCTAAAGATTACATGAACAATGAAATACAAGTAACGAGAATCTGCAAGGCCGCCGCATTGGCCAGTAAGAGATGCGAGAGCCGAATGATTAAAAAAGGACTGAGGAACAGTACAAACTCTGACCCACCCAAAGACGGCAACTGTCAGTTTTCTGCAGTATGCCATGAACTTATGAAAATGGGCATATTCCGGTCAGCAGAAACATTAAGAAAGGAGATAGTGTTGTTTCTAGAATCAAATCCAAACTCTGCAGATGGTACTCCATTAGAATTTTTCTCTGGGGTACCATGGACGCAGTATCTACAATCAATGGCACGTAATGGAACTTATGGCGACCATATAACCCTGCAAGCCATAGCTAATCTATTTAACGTACAGCTTGTAATCTACTCCACACTCGGTACTTTGGCTACGCAGACAATTACCCCTGTGAATGGGTGTCCAATTGCCACCTTTTATTTAGGCCATTTTGCAGAAGGAGCTGGGGAGCATTACGTATGTTTGGTGGACGATAGACAAGAGACAAGTGCTGCAAACGAGCTAAATATTTCCCACTCTCTCATGGACCAAGCAGAGGTCCCGCATGGCAATAGAAAAACTGAGAAAGAAGACGTTGATGATGAAGACGCCAGTGATAAAAATTGCGAAACGCAAACGCACGAAAAGGTAGACGAAGCTGAAAGTGTTCCTTACCTTAATCCGGATGTATTAGAAAAAGTTATTAAAGCAACATTGAAGACATCTCCACAAATGCGTCAGACTCTAAGGGCTGTTTCAAGATTATTTCAGCGAGTGGTGGACAGTGTTCCCCTTCCCCAGATTTACATTCCAGGGTTAGAAGACTATTCCGATATACGCCACGTCAGCTTGCGGAGGATTATAAAAATGAAAGGAAAGAACAGTGGTGCAGTAATTGCATTAAGGCGACTTATTAACTCTAGTAACTGGGCAAACGCCTGGATAAGCCTTGTTGCTTGCGGCTTAGGATGGTTTGCAGTATCAAAAATTGACTGGAAAAAAATTAATCTGTCTTCCTTGCCGGTTCAGCCAGTTGCACTGGTAGTTAAAATTTAA

Transcript

ANN16870-RA

Protein

Uniprot

Uniprot term	Description
Q8LBW2	OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 9 OS=Arabidopsis thaliana OX=3702 GN=OTU9 PE=1 SV=1
P37007	Uncharacterized protein YagA OS=Escherichia coli (strain K12) OX=83333 GN=yagA PE=2 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02338	OTU	OTU-like cysteine protease	Family	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR003323	Domain	OTU domain	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR050704	Family	OTU domain-containing ubiquitin thioesterase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12419	OTU DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579	Biological Process	protein deubiquitination	Interproscan