Detailed information of ANN16949-RA in Leptoseris scabra

Genomic Location: Scaffold_10__2_contigs__length_57677642:38448101...38455445
NR annotation: XP_020623309.1, general vesicular transport factor p115-like [Orbicella faveolata]
Species abbreviation LSCAB · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9Z1Z0General vesicular transport factor p115 OS=Mus musculus OX=10090 GN=Uso1 PE=1 SV=2
P41542General vesicular transport factor p115 OS=Rattus norvegicus OX=10116 GN=Uso1 PE=1 SV=1
P41541General vesicular transport factor p115 OS=Bos taurus OX=9913 GN=USO1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004575 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04869
all species →		Uso1_p115_headUso1 / p115 like vesicle tethering protein, head regionRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011989
all species →		Homologous_superfamilyArmadillo-like helicalInterproscan
IPR016024
all species →		Homologous_superfamilyArmadillo-type foldInterproscan
IPR006953
all species →		DomainVesicle tethering protein Uso1/P115-like, head domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10013
all species →		GENERAL VESICULAR TRANSPORT FACTOR P115Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005783
all species →		Cellular Componentendoplasmic reticulumInterproscan
GO:0005795
all species →		Cellular ComponentGolgi stackInterproscan
GO:0006886
all species →		Biological Processintracellular protein transportInterproscan
GO:0006888
all species →		Biological Processendoplasmic reticulum to Golgi vesicle-mediated transportInterproscan
GO:0012507
all species →		Cellular ComponentER to Golgi transport vesicle membraneInterproscan
GO:0045056
all species →		Biological ProcesstranscytosisInterproscan
GO:0048211
all species →		Biological ProcessGolgi vesicle dockingInterproscan
GO:0061025
all species →		Biological Processmembrane fusionInterproscan
GO:0000139
all species →		Cellular ComponentGolgi membraneInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0048280
all species →		Biological Processvesicle fusion with Golgi apparatusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ANN16949-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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