Gene detail

Detailed information of ANN16950-RA in Leptoseris scabra

Genomic Location: Scaffold_10__2_contigs__length_57677642:38456258...38468441
NR annotation: CAH3182952.1, unnamed protein product, partial [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN16950-RA

ATGGCGTCCCGGTTTGCATCCGTGACAAGCGAAGAAATCATCCAAATTAACAACGAAGCAGTCCCTGAAAACACAAAGAAAGCGACTAAATTTGGTTTGGCCGTGTTTAAAGAATGGTTTCAACTACAGAAAGAGTTTGCAACTCCATTTGAAGAAATGTCCCCACCAGAACTAAACAAATGTCTTCAGAAATTTTACCTGTCAGCAAGAAAACGAGACGGCAGTTTTTACAACAAAAAATCCCTTACCGCGATCCGAGCCGCGTTGGATCGTCACTTGAGAAGTCCTCCATTTTCCAAGCCATTTTCTATTGTTGGAGACAGTCAATTTAACGACGCAAATACTTCTCTGAGCAATTTTCTGAAAACCCTCAGCAAGAGTGGTCAAATAGCTCCAACAATGCACAAGCAACCTCTGACAAAGGAAGTCGTTGCCAAACTTTATGAAGAAGGCGAGCTCGTCGACATTGATTCACTCCAACCAAACAAAGTGCAGCAAACAGCCTGGTTTTTTATCAGTCTGTTCCTTGGAAAGAGAGGTCGTGAAAACCAGCAGATTCTAAAGAAGCACATGCTCGTCTCGAGACAAACACCAAGTGGTGAAAAATATTTCGAAATGAGCAGAGAGCGCGGAGCAGTGTTGGCGACCAAAAACCACCAAGGTGGCCTCGACGACAAAGAAGACGAGTCAAACGGCAAAATATTCGAAAGACCTGGCTCAAAACGCTGCCCGGTGAAACTCATCGAGAAATACCTGTCACATCTAAATCCCGAGTGCAGCAGTTTATTCCAGAAACCGCGAAGTCCGTGCAAATCGTTTAACCCAGCAAGAGATGCTGTGTGGTACTGCTCGACTCCACTTGGCCACAACACCCTTGATAATATGCTGCGCTTTATGACATCAAGAGCTGGTATAAAACCACACCTGACAAACCACTCAATCAGAGCCACCACCGTAACGGTTCTATCTGCTGCCAACATCGAAAGTCGACACATTAAAGCAATAACCGGGCATCAAAGCGAAGCCAGCATCCAGAGTTACTGTGACACTCCAACATTCGAGCAGTTCAAAACAATGTCAAACAAGCTTGGCGAGTTCTTCGATCCGGCAGGAAACGAAAATAACGCTGTTGCGGTCACTCAGACAACTGTTGTTCCTCCTCCCGCTCCTTCAAGCCAACTGCCATCAGCAATCCCAAGTACTTCTGGTGCTGGAAATCAGGACGACCTTCGTAATTTAATAATCAAAAGAATAGGAGCTGATAATTTACTTGACAAGATCAGTTTTATATCCAAGTCAGAGTTCTTTACCGCAGCTGTAAAATCACCTGAGATTAAAGTGGAAACAGAGACACAAGTTTTATTTGACCACGAATTTACCAAACTGTTCAAAAAGCTGGAAGCTGCCGTCACTAAAGCTATCGAAGAAGAACCTTCGCAGGAGCAAATGACGAATCATGTAAACGGGAAGATTTCACAAGGAATGGAAAATCACGACTCCATCATATCATCTTACAAAGAGCTTATCAGAGAACAGGCAGGTGATGAAGAAATTGGCAAACTCAAATCAAGGTATGGAGACATGGAATCCTCGTATAATCAGGCTCAAGTTCAAATTCAACAGCAGTCCCTAGAGATTCAACAACTTCGTGAACAGCTTCTTGTCGCTCAGAGTTTCAAACCCCAGACAGGAGTAAGTGAGTCGTTCTTTGACGAAAACATGGAAATGTCAAATCTAAGAAGTCAAGTCAGTGAATTACAGCTGAATCGAGACTCACTACAGGAGCAAGTGACAGCCAAGAACGACAAGATAAAAGAATTGGAGAAAGATCTCGAAGTCTGCCAGGCCTCTTTAGCTGTGGCTCATGCAGCCGCTGAACTCGCGGGCTCAGACACGTCAGATCTACCACCATCGCCTGCGAGCCTAAGTAGTCAGCAGCTAGAGGAGCTGGAACAGTTAAGGCGAACCGTGACGTCACTACATGGTGAACTGGAAGTATTGCGATCCATGAACACAGAGCTTCAGAATGAGATCGAGGCAGTGAGAGAAGAGGGACTTAACACACCGACAAACAGCACGGATGAAGTAAAGGCTGAGTTAGAAAGAGCGCGAACTGAAAGCCACGATAAAATCAGATTACTAGAAGAGAAGTTAGGAGTAATGGAGGCACAAATGAACAGAGTGGTAACAGAAAAAGAAGAGTTGGACAAGGAACACGAAGATCTCCTGGTTATGTTAGCTGAACAGGATGCTAAAGTGCTCAAGTACAAGAAATTGGCGCGAGATGGGGGACAAGAAGTGAGTGAGGATGAGGATGAGGAGGAGGAGGAGGAGGATGATGATGATGATGATGACGATGACGATGATGACGGTGATGATAACGATGACGAGGAAAATGAACGGGAAGAAAACACCGAAAATCAACATGAAGATAGCGCAGCGCTGGATGAGCAGGAGCTGACATGA

Transcript

ANN16950-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O60763	General vesicular transport factor p115 OS=Homo sapiens OX=9606 GN=USO1 PE=1 SV=2
P41542	General vesicular transport factor p115 OS=Rattus norvegicus OX=10116 GN=Uso1 PE=1 SV=1
Q9Z1Z0	General vesicular transport factor p115 OS=Mus musculus OX=10090 GN=Uso1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000060 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04869 all species →	Uso1_p115_head	Uso1 / p115 like vesicle tethering protein, head region	Repeat	Interproscan
PF12012 all species →	DUF3504	Domain of unknown function (DUF3504)	Family	Interproscan
PF04871 all species →	Uso1_p115_C	Uso1 / p115 like vesicle tethering protein, C terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006953 all species →	Domain	Vesicle tethering protein Uso1/P115-like, head domain	Interproscan
IPR052787 all species →	Family	Mitochondrial antiviral-signaling domain-containing protein	Interproscan
IPR021893 all species →	Domain	Domain of unknown function DUF3504	Interproscan
IPR006955 all species →	Domain	Uso1/p115-like vesicle tethering protein, C-terminal	Interproscan
IPR011010 all species →	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR013762 all species →	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21446 all species →	DUF3504 DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0048280 all species →	Biological Process	vesicle fusion with Golgi apparatus	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN16950-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.