Gene detail

Detailed information of ANN17340-RA in Leptoseris scabra

Genomic Location: Scaffold_10__2_contigs__length_57677642:48519388...48542830
NR annotation: CAH3160836.1, unnamed protein product [Porites lobata]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN17340-RA

ATGAACTACTTTGGCCGTTTGGTGTCGAACGTTCGCGGATTTTACAGCGAGATAAATTCTGCAACTCTCACCGGCGCCATTGATGTTGTGGTTGTTCGGCACGAAGATGGTTCCTTCGTTGGTTCGCCGTTCCACGTTAGATTTGGAAAACTTGGCGTGCTTCGCAGTCGAGAAAAGATCGTTGACATAGAAATCAATGGTGAGCCAGTTGAGCTGCAGATGAAACTTGGTGATGCTGGAGAAGCATTCTTTGTTGAAGAAGTAGAGAATGATTTGTCTGACAGTCTGTTGACTTCTCCGATATCATCTTCAGAGAGACTTAAGGACGTTAAAAAAGATCATGATGCGTCACACGAGGAGAGTGGCAGTAACACAACAGTCAGCATGGAAAACAGCGCTACTAAACTGTCTGAAAACACAGAGAAGGAAGCAAGCACAGCATCTGCCTTAGAAAAGGAACAGCTTACAGGTACTGATGACGACAAGGGTGAAACAGCAGCGCAAGAGACCACCGCAAATGACAGCGGAACAGACGAAAAGATACTAGATCAGACTGTTGAAGAACAGAGTGAAAAAAGCAATGATGGTAACCATAGTGACCCTGAGACAGGTGAACTTGGGGAGTCGCTGTTGTTGTCAATCAAGGAGCCATGTATGGATTTCACTGACAACACAAAGATTTCTGTGGAAGCCGAGACTGATGACACTTCAGAGATGGTAGCAGAAAGTAGTCCTGTCAAGTCAGGCAGTATTCCTATTCCAATACCACGGAACTTGGCTGATCCACAAGACTGCTTGTCAGACAGTGAAACAATGTGGCGAGAATCAAGTTCTCGGTCCATCTCCAGCAGCGGCTTTAGCAGAGAGTTCTACCCACTTTCTGACCTTGACTCACCCATCGGCACACCACCAACTCACAGTGATGAACAAGTCCTTCGCCCTCCCGACCCTCAGCGGTACCTGAGTGACTCTGAAGTAGAGCTAAAACAGTCCCAAGAGAGTATTGCAAGGGAAAGTGAGATCAGATGGGCATGGGGAAAACTACCACAGGGTCCAGAGGGAAGATTTTTGCCAGAAAGAAAATCTTCAGAAATGAGAAAAGAGGATATTAAACACGTGCATAAAGCAAAAAGAAGAGAATCATTTAAATCACATCACAAGATTGCTGAAAAGGAGGGGATTCTTTTAGACGATTTAAGGACTGTTGACCATGAAGTTGCAGCACTTTACCTTCATCAGGCATTAGACTCTAAGCTACGACAACAGCAACAGCAGAGTGGCTCTGGATCAGATGACAGGGAATCTGGCATTGGACAGTCACTTCCGTGCTCGCCTACTGCTGGAGAGGGATCTAAAGACACAGCGGTTGAGGAATACCATGATATAGCAATGTCTTTGTGTGGGGAGCTCAGAAATGGCAGGGTCTCTTTAGAAAGTTTCATTCATTCTATGGTGACGTTTGATGACTTGTCTAACAACCCAGCACTGCTCTCTGACCCCAAGCTTGTTATCAGGATTAATGACAGGTATTATAACTGGCAAATCGCCGCTCCAATGTTGATGTCTCATGTCATCTTCCAAAGACCTCTTAAACAGGAAACCTGCCAGTCCCTGGTCAAACAGCATATGCCAAAAAAGGAAAAAAGGAGGAGTTACAGAAATATGTATTACTGGTTTTCTTGGAGAGCTAATGAAGAAAAGAGTTCTGATGAAGAAAATGATGACGTCAAGAAGGATAAGCCACGGCCCAGAGTACATGGCAGCACTGCGAGAAAACAGTTGAATATCCAGGAGTCTGCAGAGAAAGATGGCAACAATGAAAATGAGATGAACGAGAGAGAAAGGAAGATTTCAGAGTGTGCCAGTGGAAATGAATCTGATATTCCTAAGAGGAACTACAAGAAAGTTACTCGGCTGTCATCGGAGCAAATTAAAAGCTTGAACCTAAAAGAAGGAGCTAACAGCATAACATTTTCAGTGACCACAAAGTACCAGGGCACTGCAATGTGCATGGCAACAATCTACTTGTGGAACCACAGTGACAAAATTGTCATCTCAGACATCGATGGTACAATAACCAAGTCTGATGTCTTGGGTCAGATTTTACCAGTAGTTGGACAGGCTTGGGCACAATCAGGAGTGGCTCATTACTTTGGAAAGATCCAACAGAACGGCTACAAGGTTCTTTATTTATCAGCTAGAGCTATTGGACAGGCACAGCAAACTCGTGATTACCTGAAGAGTGTAAAGCAAGACCAATTGATGTTGCCTGACGGACCGCTTCTGCTATCTCCTGAGTCACTCATCAAGGCTTTTCACAGAGAAGTGATTGAGAAGAAACCAGAGGAGTTCAAGATCGCCTGTCTGAGAGATATTCAGAGCTTGTTCCCTTCAAATAGAAATCCTTTTTATGCGGGATTTGGAAACAAAGTCAATGACGTACTCTCTTATCGCGCGGTTGGTATTGCAGTGTCCAGGATTTTTACAATAAACCACAGGGGTGAAGTGAGGCATGATTTGACGAATGCTTTCCAAACATCGTACATTAAACTCAGTGATCTGGTGGACCAAATGTTCCCGCCATTCAAGACAAAGAAGATGTCGGGGCTCGTAGCGCCTGACCAGTTTAGCTCCTTCACTTACTGGAGAGCGCCCCTACCCGACATTCCTCTCGATGACTTTGATGATATTGGCGATGACAATAAGAGTGAACCTACAGTATCTAAACAGTAA

Transcript

ANN17340-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q92539	Phosphatidate phosphatase LPIN2 OS=Homo sapiens OX=9606 GN=LPIN2 PE=1 SV=1
Q14693	Phosphatidate phosphatase LPIN1 OS=Homo sapiens OX=9606 GN=LPIN1 PE=1 SV=2
Q99PI5	Phosphatidate phosphatase LPIN2 OS=Mus musculus OX=10090 GN=Lpin2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004470 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04571 all species →	Lipin_N	lipin, N-terminal conserved region	Family	Interproscan
PF08235 all species →	LNS2	LNS2 (Lipin/Ned1/Smp2)	Domain	Interproscan
PF16876 all species →	Lipin_mid	Lipin/Ned1/Smp2 multi-domain protein middle domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007651 all species →	Domain	Lipin, N-terminal	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR013209 all species →	Domain	Lipin/Ned1/Smp2 (LNS2)	Interproscan
IPR026058 all species →	Family	LIPIN family	Interproscan
IPR031315 all species →	Domain	LNS2/PITP	Interproscan
IPR031703 all species →	Domain	Lipin, middle domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12181 all species →	LIPIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0008195 all species →	Molecular Function	phosphatidate phosphatase activity	Interproscan
GO:0009062 all species →	Biological Process	fatty acid catabolic process	Interproscan
GO:0019432 all species →	Biological Process	triglyceride biosynthetic process	Interproscan
GO:0032869 all species →	Biological Process	cellular response to insulin stimulus	Interproscan
GO:0044255 all species →	Biological Process	obsolete cellular lipid metabolic process	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15728	LPIN; phosphatidate phosphatase LPIN	EC:3.1.3.4	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.