Genomic Location: chr3:227087244...227096719
NR annotation: VDI48118.1, Hypothetical predicted protein [Mytilus galloprovincialis]
| CDS | ||||
| ANN17398-RA | ||||
| Transcript |
| ANN17398-RA |
| Protein |
| ANN17398-RA |
| Uniprot term | Description |
|---|---|
| P17139 | Collagen alpha-1(IV) chain OS=Caenorhabditis elegans OX=6239 GN=emb-9 PE=1 SV=5 |
| P29400 | Collagen alpha-5(IV) chain OS=Homo sapiens OX=9606 GN=COL4A5 PE=1 SV=2 |
| Q28247 | Collagen alpha-5(IV) chain OS=Canis lupus familiaris OX=9615 GN=COL4A5 PE=2 SV=2 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00078 | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) | Domain | Interproscan |
| PF01413 | C4 | C-terminal tandem repeated domain in type 4 procollagen | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000477 | Domain | Reverse transcriptase domain | Interproscan |
| IPR001442 | Domain | Collagen IV, non-collagenous | Interproscan |
| IPR036954 | Homologous_superfamily | Collagen IV, non-collagenous domain superfamily | Interproscan |
| IPR016187 | Homologous_superfamily | C-type lectin fold | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR33332 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005201 | Molecular Function | extracellular matrix structural constituent | Interproscan |
| GO:0005581 | Cellular Component | collagen trimer | Interproscan |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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