Gene detail

Detailed information of ANN17457-RA in Leptoseris scabra

Genomic Location: Scaffold_10__2_contigs__length_57677642:51949584...51965029
NR annotation: CAH3015334.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN17457-RA

ATGGAAGGACATTCAGAGTACCAAGAAAGCATTAAATTCCGAAAACAGCGTCTAAAAATGTTTCAGGAACTTGGAGATAGACAAGCAGAGGGAGAGGAATACAAACTTCTAGCTCAGACGTATTACTCTCTTAAAGACTACCATCTAAGTATTGAACACGGTAAAGAAAGCTTAAGTATTGCTAAGGAAATTGGAAATAGGCAATCAGGGGGAGACATGTGTAATGTTCTAGCCCGGTCGTATTTCAATCTTAAAGACTACCAACTAAGTATTGAACATAGTAAAGAAAGCCAAAGTATTGCTAAGGAAATTGGAGATAGACAAGCGGAGGAAGACGCGTATAGAGGTCTAGCGTGGTCGTATTACTTTCTTAAAGACTACCAACTAAGTATTGAACATGGTAAAGAAAGCTTAAGTATTGCTAAGGAAATTGGAGATAGACAAGCGGAGGAAGACGCATATAGAGTTCTAGCCCAGTCGTATTACTCTCTTAAAGACTACCAACTAAGTATTGAACATGGTAAAGAAAGCTTAAGTATTGCTAAGGAAATTGGAGATAGACAAGCGGAGGAAGGCGCGTATAGTGTTCTAGCCCGGTCGTATTACTCTCTTAAAGACTACCAACTAAGTATTGAACATGAAAAAGAAAGCTTAAGTATTGCTAAGGAAATTGGAGATAGACAAGGAGAGGCAGAGACGTGTAATACTCTAGCCTTGTGGTATTACAATTTTAAAGACTACCAACTAAGTATTGAACATGGTAAAGAAAGCCTCAGTATTGCTAAGGAAATTGGAGATAGACAAGCAGAGGAACACGCGTATATACTTCTAGCTTCCTGCCATTACGATCTTAAAGACTACCAACAAAGTATTGAGCACGCCAAACAAAGTCTTGGCATCTCCAAAGAAACAGGTCACAAATATGCAGAGCTGAACTCTTACCAGATACTTGCAGACTCGTATAAACGTCTTGGAGACCACAAACAAGCAATGGAATGGGCTAACCGGGAAATAAGAGGAGGAGAGTCGTCTTGCAGTCTTGGAGAATACAAAGAAGCCAGTGAAAGCAACCCTCAAATGCAAATTACAGAGAAACGTTTTGATGCATCATCAGACTCAGTGGATCCTAAAGAAGCCAAAGAAGGGGAAGATATATTCTACGGAGTCGGACTTTCAAACGATAGTTCAGTACCAAGTGAGATTAAAGCACGAGGACCAAGAGCGCAGCTTGCCTATGTAAATGCGTTGAAGACTGGAAAAGTAAAGGTGTACCGTGCTAGGATCATGCTGATAGGCCAAGATCGAGCGGGAAAGACGAGTTTGAAGAAATCCTTCTTAGGTCTGCCATTTGACCCTTATGAGCAAAGCACTGATGGAATAGAGGTTGACCCATCAAAGTTCGAAATTGACGTTGATCAAATGAAGAACTGGCAGCGAACTGACGAGAAGTTAAGTGTGTCTCAGTTTGTAAACGACCTTGCAAAGATGGTGGCTGCTCAATTTGGGGGAGAGGGAACAAGCGTAACTCCAGAAGTTCAAGATGAGCTAAAGAAGACCGCATCTCTAAAGAATGAGATTCCTTATAGGGAAGAAACAACGCCTAAAGCTGCTAAGGTACAGGAAGTTCACACAATCCACCACAACCAAAAAGCAGCTGGAGAATCTACCCTACCTGCATTGGATATCGATCCTACCTTACCTCCAGAAGAATTCACCCGTCTTCTTATTCAGCATTTGAAAGGTTTGAAGCTGCAGACTGACACCACATCGACAGAAAACCACATGACCCTAGACCTGTGGGACTTTGCAGGACAGCATCTTTATTACGCTTCCTATCCAGTGTTCTTGTCATCACGTGCAGTTTATATGCTGGTCTACAATCTCAGCAAAGAATTAAAGAACACGGCTGAACCCTCCGCCAGATTAGGAAGTGCTGACATTCCTCTGGAAAACCCAAGTGGTGAGACAAATCTGGACAACCTGGTTTCCTGGCTTGGTTCAATCAGTACTCTGTGCTTATCGAAACGAATGGATGACAGCAGACAGCTGGAGAAAGTTTTTCCATATCTACGTCCCCCAGAATTTATCGTTGGAACGCATGCTGACAGACCGTGTCAAGACATCGGGAAGATGGAATCAGAGATTCAGGGTGCGCTTTTTGGAAAGGAAGTTGATGGACACGTGATCCGCACTTTCTTTCGAATCGATAATACGAAAGGATCATCTGATAAAGGAGTTCGTGCACTTCAGAAACTCATGATTGAAGTTTTGAAGCAAGAGCCCTACATGGGGGAGGAGGTACCACTGCGGTGGTTTAACTTTGAGAAGGTTATCCAAGCTTTGGTTGCCAAGGAGATGTATTACTTAAGCCTCCAACAACTTCAAACTGTCATCCAGGAAGTGTGCTTTATTGACAATGAAAATGAAGTTACCACTATGTTGGATTTTTATCACGACCTCGGCATCATTGTAAAGCATGGCAGCACCGTTGTGCTACAGGCCCAGTGGTTGATTGATCTGTTTAGACAGCTTATAACCATTCGTCGTTACAATGACATGGAATCGCGGCATTCCACGTTGTGGAAACAAATGGAAGAGAAAGGTGTCCTCAGCATGGGCCTTGTTGATCACGTTTTTTCCAAATATTGTGAGCAAGGCTTCATCAAGGAGGACATATTGGGTATGATGGAGCAATTCGGACTGATCGTTAAGTTTGAATCCTCTCTGACTGACGTAAAATATTTTACACCAAGTCAGCTGAAGAAACCATCTGCACGCCTTAGTAAAATGGAGCCTTCACCCTCAGATCCATGTCCATTGTACATTCGTTTTCCAGGGGGGCTGGTTCCTCATGGTCTCTACTCACACCTCGTGGCACGATGCATCAAATGGTGTTCTGAGAGTGGATTCGTGCGGGAGCCAGTGTTGCGCCACATGATATCCAGTTTCACCATAAAGAAGGAAGAAGCTTACCACTTAATCTTGTTTTGTCAGAAAATGTTCATCCGTGTCATCTTAAAGCAATCACAACCAGACAAGGAAGCCCCATTGGCTGAAATAGAAGAGGTGGCCAGTCTTGTGCGAAATTTTCTTGAAGAAGCGCTGGAAAAATTGTCAAGGGAGTTATCCTGGTGGGGAAACTTAAAGTATGACTTTTGTGTTGCATGCCCTTACTGTCCAGAGGAGGAAGAGCCATGTACTAAACACCGCCAGGTCTCCTGCACCCACGAAGACTGCATCTGTTTTCTCAAAGTTCAACAAGGAGGAGAGCTGGGCTGTTGCAAACACAGTGGTGAAATACCAACGATTCCCAGCTTGAGAAAATGGTTCTCAAACAAAGGTGGCTCTGAAGATAAAGAGATGGGAGCACCCGCAAAGAAAAGAAAATCATCGCGTCCCTCTCCTGAGTGCATCAAGCGAAGGAAACTTTCGGACGATCCAGCGAAGCAAAGTTTATGTGATGTTGAGCAACTGCAACGTTATCCTAGAAACGACACCAGGATGACTGACGTATCAAGAAGGTTGGACGAGATTGCTTCAGACAAAGGCTTCACAGTTTCTGACAATGAGGGATCAGGAAATTGCATGTTTTACTCATTGTCAGAACAACTGGACCTTGTGAAGGGAATTCAGATATCTCATAACGCGTTGAGGCAGCACATTGTCCAGTATCTCGAGAAGAAGCCTACTCTGTCAGATGGGACGAAACTGTTCAATTTTGTTCACGGGTATCAGTCTTGGTCTGATTACCTAACAAAGATGTCAGCAGATGGGACGTGGGGTGATCACGTGATCCTCCATGCTGTATCAAACTGCTATGAAACATGCATTCATGTGATTAGCAGTCTGTCACCCAATCATGACGTAACCATCAGCCCAGAACAAAAACGTGATGTTGAAAGCAGCAACCGGCTTGTGCTGGGGCACTTACACGAGCACCACTATGTCAGTCTTCAACCCAAACGAGGTAGTTCTAGAGATGAAGATATGCCAACGCCAACATCCAAAAGAGGGTCATCATGTCCCAGTCCTACTCAGTACTTCAAGCGTCTTCTGGACAACACAGGTTTAGTGAAAGAAGGATGTCCGTCTAATGATGAACTAGAACGTCTATCAATGAATCTAGAGGAATGGAGACCACTTGGGCGTCGACTGGATTTTAACAAAGCACAGCTGACTGGGTTTGATAACGACACTGAATTATGGCGTGAGAAAGCCTTTGCCATGCTAATGGCGTGGAAGCGAAGAGAAGGCAAATCTGCGACATACAGAGTCTTATATGAAGCATTGCGTCATGAATTTGTAAATCGTAAAGACTTAGCGGAGAAATTTTGCTGCCACCCTGACTAA

Transcript

ANN17457-RA

Protein

Uniprot

Gene family

Uniprot term	Description
Q55E58	Probable serine/threonine-protein kinase pats1 OS=Dictyostelium discoideum OX=44689 GN=pats1 PE=3 SV=1
Q5S006	Leucine-rich repeat serine/threonine-protein kinase 2 OS=Mus musculus OX=10090 GN=Lrrk2 PE=1 SV=2
Q5S007	Leucine-rich repeat serine/threonine-protein kinase 2 OS=Homo sapiens OX=9606 GN=LRRK2 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	DUB\|OTU\|OTU

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08477	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF00531	Death	Death domain	Domain	Interproscan
PF02338	OTU	OTU-like cysteine protease	Family	Interproscan
PF16095	COR	C-terminal of Roc, COR, domain	Family	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003323	Domain	OTU domain	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR000488	Domain	Death domain	Interproscan
IPR052386	Family	G-protein-signaling modulator	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR032171	Domain	C-terminal of Roc (COR) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45954	LD33695P	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0000132	Biological Process	establishment of mitotic spindle orientation	Interproscan
GO:0001965	Molecular Function	G-protein alpha-subunit binding	Interproscan
GO:0005092	Molecular Function	GDP-dissociation inhibitor activity	Interproscan
GO:0005938	Cellular Component	cell cortex	Interproscan