Gene detail

Detailed information of ANN17485-RA in Leptoseris scabra

Genomic Location: Scaffold_10__2_contigs__length_57677642:52509770...52526799
NR annotation: CAH3156956.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN17485-RA

ATGGAATCCTTTCATGAAGATGCAGTCAACGCCATTATCAAGTACCTTAAGCTACTGCCATCGAAAGTCTTGGATGGAAAGACGATGGCACCGAAGGAGCCCTTCGAGCTCGCTCGGAGAATCTTCGCCGACCCGATCATCAGCGACTTTCTCATTCGTTCATCTCGCCTAACTGTGTTTTCCAAAGAGCTGGCAAAATTGTTCAGAAGTGATCTGGACCTGCTTGCAGTGGCTAAACAACTGAAATTTTTCTACAACCAACCAACCGTTGGCGTTTTGCAGCAGTTAGCCATTCTTGCAGCAAGGCCACCCCATGGAAACGATGCCGAAGCTATCCAGAAATGGAACACAATCGTGCAGAGATTTGCCGAATGCAGATTAGGTGTCATGTCGGTGCGTAGTCTACTCAAGGAAATCAACGGTCCAGCGTGCTATGAGGAGAATGCTGAAAAAATGAAGGAGGCGGATCCGCATGCCGTGTTTCCTACATCTATCTACCGTGTATGTGATGGGTACATTCTGGCCAAGCCAGATGCATCAGTGATTGAAGGCATCGTGAGTCTGACTCTGACCACAACCATCAAGATTGTCAACAACGTGTTGAACCCTGCCAATCTTGAGCTGAAAAATGTCTACCAACCCCTGGGAAGATGCGTGGCTGTGATTGATGACAAAGTGGAGAAACTCTACGGTGACGCTATTCAAGACTACTTCGACCAACACCGAATCGAGCTGAATAAACTGGTGTTCTCTGGCGATGAAGTCGATAAGGACATTTCCACAGTGAAAAACATCCTGGTATCCTTGAAGAAACTTGGCGTCGCCAGAAACGAGCCGATACTAGTTGTTGGCGGAGGGGTGATGTCTGATGTCGCTGGTTTTGCCACGGCTTTGTACCACCGCGAGACGCCTTACGTAATGCTCTGCACGAGCATCGTGGCTGGAATAGACGCCGGACCTTCCCCGCGTACCTGCTGCGACGGATTTGGGTACAAGAACCTGTACGGAGCCTACCATCCGCCCATCCTAACACTCACTGACAGGTCCTTCTTCCGTACGCTGAAATATGGATGGCTGCGACATGGCATCGCTGAAATCATAAAAATGGCGGTTGTTAAGGATGAGGAGCTGTTTAGTTTGCTGGAGAAGGCGTCTTCGGATCTAGTGAGGACCAGATTTGGCACTGAGATGGAAGAGTATGATGGCGATCACGAGGCTTTTGGAGCTCTGTGCGACTTTGTCGTTGGAAAAGCTCTTGAATGGTACGTGAGGGCAGAGTATGGAAACTTATGGGAAACTCATCAATGCCGACCACACGCCTATGGCCACACGTGGAGCCCTGGGTACGAGCTTCCTTCCGGCATGCTTCACGGTCACGCTGTATCGACTGGGATGGGTCTTGGCGCTTATCTTTCCTTCTGTGAAGAATGGACTACGGGGCATGATTTGGAGCGCATCTTGAAGCTGCTGAGTGATCTTGAATTATCCCTGTGGCACCCAATTATGGAAGACACGCAGAGAATCTACAATGCCCAAGAGAAAATTGTTGAGAAGCGCGGAGGGAACCTCGTAGCCCCTGTTCCTAAGGGCATCGGAAAGTGCGCCTATATAAACCACCTGCCGTATGAGCTCCTGGTCAAGCGTCTCGATGAGTACCATTGTATCTGCGAAGGATACCCAAGAGGGGGCCTAGGAGTGGAGGTCCACTGTAGGGATGTCGGACTGAAAGACCCAGCAACGGAATGCATCGTGAATAAGGATGTCCTAGAGATCCAGAATGGCTACGAGAATGGCTACCATGGCGACGAAAACCAGGGCAAAATGAAGATTCATGTGAGCAATGGCCGCCTTGCGATCTCCCAGGGAATAGAAGATAACCAAAACAAGATCACTAAGAGCTTGCTTTCTCAAGTGGCTCTCTCTCGAGTTGATGACACGGCGAGTCCCCCGAGCTTCGAGCCCAACGAGCTGTGCTATCCAGGTGTCGACGATTACGCTGCCAAAATGACACAAGTCAGTAGTGGAGATATCCAGAATATTGCGCGTGTTACACAGGAAGGACAGATGTTCACACCTCGCATGGCCGGGCAGCTGGAAGCGCAGTTTTTAAAGATGATGGTGCAGCTCTCCAAATCCGATCGTGTCCTTGACGTGGGTACATTTACAGGCATGTCAGCAATGGCCCTTGCTGAAGGTTTACCAGAAAAGGGTGAAGTGGTCACTATTGAATTGGACCCTAAAATCGCCTCAGTTACTGATCGCCTTTTCCGTAGTTCCTCACAAGCTCAGAAGTTGACCCTTAAGATTGGAGACACAGTAAACATCATGCGCGACCTAAAAAACGCGGGGGAGAAGTTCGATATTGTGTTCTTGGACGCATCCAAGGATCAATACATCTCGTACTACAAACTTGCCAAGGAGATGCTCACACCTTCGGGATTCATCATGGCGGACAACTCATTAGGTGCAATACTGTACGAAGCAGGAGACTCGAGAAAGCAGGCCCTACATGACTTCAACCAGCTGGTGAAGAACGACACTACAGTGGAACAACTGGTATTGCCTCTCAGGGAGGGCCTGTCTATTATAAGACCAAAGACATTTTACTGA

Transcript

ANN17485-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3M6C3	Demethyl-4-deoxygadusol synthase OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=Ava_3858 PE=1 SV=1
B2J6X9	Demethyl-4-deoxygadusol synthase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=Npun_R5600 PE=1 SV=1
A8D7K2	2-epi-5-epi-valiolone synthase OS=Streptomyces albus (strain ATCC 21838 / DSM 41398 / FERM P-419 / JCM 4703 / NBRC 107858) OX=1081613 GN=salQ PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004465 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01596 all species →	Methyltransf_3	O-methyltransferase	Domain	Interproscan
PF01761 all species →	DHQ_synthase	3-dehydroquinate synthase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR050071 all species →	Family	Dehydroquinate Synthase	Interproscan
IPR002935 all species →	Family	Class I-like SAM-dependent O-methyltransferase	Interproscan
IPR030960 all species →	Domain	3-dehydroquinate synthase domain	Interproscan
IPR035872 all species →	Family	2-epi-5-epi-valiolone synthase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43622 all species →	3-DEHYDROQUINATE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003856 all species →	Molecular Function	3-dehydroquinate synthase activity	Interproscan
GO:0008171 all species →	Molecular Function	O-methyltransferase activity	Interproscan
GO:0017000 all species →	Biological Process	antibiotic biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN17485-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.