Gene detail

Detailed information of ANN17489-RA in Leptoseris scabra

Genomic Location: Scaffold_10__2_contigs__length_57677642:52613462...52652224
NR annotation: CAH3156941.1, unnamed protein product [Porites lobata]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN17489-RA

ATGGTCATCGACACACCACAATCAACCTCGTTCCCAGGGCAGTCCGCGGGGGTCCGCGGACAGCCCTGGGAACGAGGTTGCACTACAATGATGCTACTTGGAGACAATTCTTGTAAATGGGAGTTGAAACTTTGGGATTTTTGGTGTTCCGCCATGGTAAAGGATCAGTTCAGAGAGTCTGGTGTCACTAAAAAGATAAGCCATGTCAACTTTGGCTTGTTCTCGCCAGAGCAAATGCAACAATATGCTCACATTCACTGCGTTAGCAAAAATCTGTATAATCAGGACACGTCTCGTACCCCAGTCCCATTTGGGGTGTTGGATTCTCACATGGGCACAAGCTCTAAAGACCGGAATTGTGAGACGTGTGGCAAACCACTGGCTGATTGTGTTGGTCATTATGGATACTTAGATCTTGAACTTCCAATCTTCCATGTTGGATTCTTTAGATCAACCATAGTGATCCTACAAACGATATGCAAAATATGTTCAAGGGTACTTTTACCACCACAAGAAAAGAAACAGTTTCTGGATCAGTTAAGTCGCCCTGGAGTCTCTTCTTTGACGAGGAAGAGTATCAAGAAAAAGATTGTTGAAAAGTGTAAAAAGATTTCTCATTGTCCATATTGTGAAGCATTGAATGGTTTTGTACGGAAGAGTGGTATGATGAAGATTGTACATGAAAAGTACAAGTCAACCAGGAAGTTAGTTGACCCTGTCATCTCAGAATTTCAAGCATCATTTGACTCAGCAGTAGAATACAACAAAGAACTTGATAGTTTGCTGAGCAAAGCTCAGCCATCAACCAACAGCACCACCATCATCATCGTCGTCGTTGTCATCATTTTCGTCATCATCATCATCATCACTATAGCGGTCATCCTCAGTGACAATGCCAATGAAGTACTTAACCCACTGAGAGTTATAACTTTGTTTGAACAAATACCAGACCAGGACTGTCCTCTGCTAATGATGAAGCCAGAACTAGGCAGACCAGAAAACCTTATAGTAACACGGCTGCTTGTCCCACCTGTCTGCATAAGGCCGTCAGTTATCAGTGACCTACAAAGTGGAACCAATGAAGATGATCTCACCATGAAGTTGACAGAAATTATTTTCCTCAATGATGTTATTAGCAAACACAGAGCGACTGGAGCCAAGATACAGATGATAATGGAAGATTGGGATTTTCTCCAGCTTCAGTGTGCATTGTATATCAACAGTGAAATGTCAGGCATTCCTCTGAATATGCAGCCCAAGAAAGGAACAAGAGGATTTGTTCAGCGACTGAAGGGGAAGCAGGGTCGGTTCAGAGGTAACTTGTCTGGAAAAAGAGTTGACTACTCTGGGCGCACTGTCATTTCTCCTGATCCTAACCTTCGTATTGATCAGGTTGCAGTTCCAGAACATGTGGCCAAGGTCCTTACCTATCCAGAAAGGGTTACAGAGGCCAACATGAACTTGATGAAACAGCTAATCCTGAATGGTGCGGATAAGCATCCCGGAGCAAACTTCATTCAGCAAAGACAGACTAACATAAGAAAGTTTCTCAAATATGGGAACAGAAAACAGATTGTCAAAGAATTAAAGTATGGTGATATTGTGGAACGGCACTTAATGGACGGAGATGTTGTGTTGTTCAACAGGCAGCCGTCACTTCACAAGCTTAGCATCATGGCACATCAGGCTGTGGTTCGACCACATCGGACATTCCGATTCAACGAGTGCGTATGCACACCTTACAATGCGGACTTTGACGGAGATGAAATGAACCTTCATCTTCCGCAAACAGAGGAAGCTAAGGCTGAATCTCTAACCCTGATGGGGGTAAAATCCAACTTGGTGACGCCCCGAAATGGTGAACCACTCATAGCCGCTATTCAAGACTTCATCACAGGAGCATATCTTCTGACGCAGAAAGACGTTTTTCTTGACCGAAGCCATATCTCACAGCTGCTAGCCTACATACTAGCTGGAAAGGATGTAAATATGAGAATCGATCTCCCCCCTCCTGTTATCTTGAAGCCCGTGAAACTGTGGACTGGAAAACAGGTGTTTAATGTTGTGCTGAGACCAAACAAGGACATGCCAATCAAGATGAATTTACGAACGAAGGGAAAGCAGTACACAAGTGGGGAAGATCTCTGTGCCAATGACTCTTATGTGGTGATTCACAACAGTGAGCTCATGTGTGGCGCGCTGGATAAAGCGGTGCTAGGATCTGGCTCCAAAAACAGCATCTTCTATGTTCTTCTTCGAGATTTTGGCGGTCAGGCGGCTGCAGATGCAATGTGGAGAGTAGCAAGAGTTTGTCCATTTTTTCTCAGTAACAGAGGATTCTCCATTGGGATTGGTGACGTCACACCTGGGCAGGGACTTCTGAGAGCGAAAGATGAACTCCTCAAAAATGGTTATTCTAAGTGCGACAACTTCATCCAAGATTTTAAAGAAGGCAAGTTGCAAACCCAGCCTGGCTGCAGCGCAGATGACACTCTTGAGGCTGTTATTCTGAAAGAGCTGTCTGTTATAAGAGATCACGCAGGAAAGGCGTGTCTTCGTGAGCTTCATAAATCCAACAGTCCTCTCACTATGGCAGTCTGTGGCTCCAAAGGTTCGTTCATCAACATCTCACAGATGATCGCTTGTGTCGGTCAACAAGCCATATCCGGCAAGAGAATTCCCAATGGGTTTGAAGACAGAGCCCTACCTCACTTCCATCGTCACTCTAAAGCTCCCGCGGCCAAAGGATTTGTAAAGAACAGCTTTTACTCCGGACTCACTCCGACTGAATTCTTCTTTCATACCATGGCTGGACGAGAAGGTCTTGTTGATACCGCGGTCAAAACTGCAGAAACCGGTTACATGCAAAGAAGATTAGTGAAGTCCTTAGAGGACCTAGCGACCCAGTATGACTTAACAGTGAGAAACTCAATGGGTGACATAGTACAGTTCATGTACGGAGGAGATGGCCTGGATCCTACTGACATGGAGGGAAAGGATAAACCGCTGGACTATAATCGCGTGTTCAGCCATGTTCAGTGCTCTGTGCCCATGAAAGATGAACAGACTCTCACTTCAGAGGAGATTCTAAAGCAAGCCTTACCAACCATTGACGGACCGGACTTCCAGGACTGTGGAACAGAGTTTAAAAAAGAATTGACAGCCTTTGTCGAAGACATTGCAGGCAAAGTAGAGACGAAATATCGAAGGCTTGACTTGGAAAGGTCGTCTGAAGAAAGTGATGTCCCCAACGTGTTTTCATGGGTGAATCGCTGCACCAAATCTCAACTGAAGCACTTCCTGAACTTGTGCAAGGAGAAATACTCCAGAGCAAAGATTGAGCCCAGTACGGCAGTGGGTGCCCTGTGCGCTCAGAGTATTGGGGAGCCTGGGACACAGATGACGCTGAAAACATTTCATTTCGCTGGAGTCGCTTCCATGAACATCACTCTTGGTGTTCCCCGAATAAAGGAGATCATCAATGCTTCTCGTTCCATTAGTACTCCAATCATCTCCGCCCAGCTGATGAACGACAAGGACGCTGGCGAGGCCAGGGGCGTCAAAGGGAGGGTCGAAAAAACCTTACTAGGGGAGGTTTCTGAGTACATCGAGGAAGTGTTTCTGCCGGACAGTTGTTTTATTCTTGTCAAACTGGCTCTGGACAGGATCAGACTACTCAAGCGGACAACTGAACGACGAAGTGACAATTTTATTGCTGAGAACAGAAACAAAAACACAACTAAAAAGACGCAAAGTGACCTTAATGTGTTTTACAGATGGGAAAAAACTGTCAACGAAACAAGAACTATTGAAAACATACCAGAACAAGAACTGGACAAAGTTTTGGCTCACTTTTTTTTAAACGTACGTAAGACGAACGGGGACGAATATGAACCTGATACGTTGACGTCTATGTTACGAAGTTTCGACCGGTTCTTAAGGGAAAAAGAAAAACATTACTGTATACTCACAGACAGACAGTTCACGAAGGTCAGAGAAGCTCTATCTTCAAAGCGAAAACAGCTTCGCATGTCCTCGAAACTCAGCAGCTTCATCCAGCTTGAAGTTGATGTCGACTCCATACGATTTGCTATCTGCAGTGCAAAGAAGCTAAAACTAAAACCTCAGCAAGTGACCGCCTTGAGCAAGTCAGAGCTGTGTATTTATCCAAGTGAGAGCAGCAAATCTTCGCTTCATTACACCATGCAGATGTTAAAGACGGACCTTCCTAGCGTCTTGATCAAGGTATTGCTGAGTTACAAGAATAGCCGGGTTATTTTCCTTAACACGGACTATTTTGACGTTCTAATGGCTTTGGCTAAATACGTCGACACTTTAATAAAGGTTTTACTTACTTACTTACTTCAGGGTCACAAGAATGTAAACCGGGCTATCATCCACGTAGATGAAAGCAAGGGTGACACTTACAAGCTGCTGGTGGAAGGCGATGATTTACTGTCTGTCATGTCTACTGTTGGTTAG

Transcript

ANN17489-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZL98	DNA-directed RNA polymerase III subunit RPC1 OS=Gallus gallus OX=9031 GN=POLR3A PE=2 SV=1
O14802	DNA-directed RNA polymerase III subunit RPC1 OS=Homo sapiens OX=9606 GN=POLR3A PE=1 SV=2
A4IF62	DNA-directed RNA polymerase III subunit RPC1 OS=Bos taurus OX=9913 GN=POLR3A PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003075 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05000 all species →	RNA_pol_Rpb1_4	RNA polymerase Rpb1, domain 4	Domain	Interproscan
PF04983 all species →	RNA_pol_Rpb1_3	RNA polymerase Rpb1, domain 3	Domain	Interproscan
PF04997 all species →	RNA_pol_Rpb1_1	RNA polymerase Rpb1, domain 1	Domain	Interproscan
PF04998 all species →	RNA_pol_Rpb1_5	RNA polymerase Rpb1, domain 5	Domain	Interproscan
PF00623 all species →	RNA_pol_Rpb1_2	RNA polymerase Rpb1, domain 2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007083 all species →	Domain	RNA polymerase Rpb1, domain 4	Interproscan
IPR006592 all species →	Domain	RNA polymerase, N-terminal	Interproscan
IPR035697 all species →	Domain	DNA-directed RNA polymerase III subunit RPC1, N-terminal	Interproscan
IPR042102 all species →	Homologous_superfamily	RNA polymerase Rpb1, domain 3 superfamily	Interproscan
IPR007066 all species →	Domain	RNA polymerase Rpb1, domain 3	Interproscan
IPR045867 all species →	Family	DNA-directed RNA polymerase, subunit beta-prime	Interproscan
IPR044893 all species →	Homologous_superfamily	RNA polymerase Rpb1, clamp domain superfamily	Interproscan
IPR007080 all species →	Domain	RNA polymerase Rpb1, domain 1	Interproscan
IPR007081 all species →	Domain	RNA polymerase Rpb1, domain 5	Interproscan
IPR038120 all species →	Homologous_superfamily	RNA polymerase Rpb1, funnel domain superfamily	Interproscan
IPR000722 all species →	Domain	RNA polymerase, alpha subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19376 all species →	DNA-DIRECTED RNA POLYMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003899 all species →	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0001056 all species →	Molecular Function	RNA polymerase III activity	Interproscan
GO:0005666 all species →	Cellular Component	RNA polymerase III complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN17489-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.