Gene detail

Detailed information of ANN17499-RA in Leptoseris scabra

Genomic Location: Scaffold_10__2_contigs__length_57677642:52910591...52932733
NR annotation: CAH3193980.1, unnamed protein product [Porites evermanni]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN17499-RA

ATGGATGGCAAAGCTAAGTGGCGTTCTCCAAGAACTGTGAAACGGAAACAGTTTTTTGATAATGGAGATTTGTCCCATGACAAAGGTGAACGCTTTAGAGCATGCGAGAAGGCAGGCTGTCCGGCAAAGAGACCAACGTGCTGTGCAAGATTTGATGAGACCTGTTCTGGGGCTGGTTACACATCAAGATGGTACCACATGTCTGATGGAGAACATTTCTGTAATGCTTGTTTTGATTACATGTACCGCAGCTGCAAGGATGGCTATGAAACCTACACAAAATGGAAGATTGACTGGAGCACAAATGGACGGAGAGAAGCAAACATTAAAGTGTATGTTTCAGAAATGATCATGCCATATTGGGTTCAGTGTACTCTTTGTTCAAAGTGGAGGGAATTTCCAGAGAAAGAGCTGACAGCAGATGCTATTAAATGCTGGAAATGTGTACCGTCAACTTGTGCGATCACAAGTGAATCCAAGGGGAAAAAGAAAACAGTCAGTCCTTGTAATGTTCAGGAGGATGAGAGAGTTTCTGCAGTGAACAGTGCCGGTTGGTTGGAAAGTCTAACAGAGCCACCTCTTCTTCAAAGCAGCCCTGCTGCACGGTTCCTCACATCTTATTTTCCTGATGGTGTCGGCCTTAGTCCTACACTGAATGATTGGAAACAAAAGGACCAAGATTGTACAGGGTATGTGAAGCTGTTTTATAACCCAGACCACTCTCAGACAGCCCTCACTTTCCGTCCTGACGTCATGGAACAAGATGAGAAAGCGACATTCCCGGAATATGTCAGGCATCCAATGCTTTATCTTGCACTGAGAAATCTTATATTGTCACTATGGATGATCAGTCACAAGGAATTTCTAACTCCAGAGAAGTGTGCTAATCACATTATCGTTAGAGGCCTAGTCAGGGTGTTAATGGTTGCAGAAGTTAAAAGAGTTCTGCCTTTCCTGACAAAGAAAGGATTTATTAACCATGGTATATTACCTGGTGTGCCAAGAAGTCTGGCTGCACTTCAAGATGTAAAGCTTTCAGTGATTGTGGTTGGTGCTGGAGCTGCTGGTTTGTCGGCAGCAAAACATCTCAACAACTTTGGTGTAAAGGTGACTGTTGTGGAGAGCAGAGATAGGGTTGGGGGTCGTGTCTGGGATGACAACAAGTCTTTAGGATGCTGCGTTGGTAAAGGAGCTCAAATACTCAACGGATGTGTAAATAATCCAGTGTCTGTGTTATGTGAGCAGTCTGGTCTCAGCATGCACCACATTAGCAGTAAGTGCGATCTCCTCACAGAAGATGGCCAGTGTGTTGACAGTAGCACGGACAGTAAAGTAGAATTTCACTTCAATGCGCTGCTTGATGCCATTGCTGATCAGAAGAGAGATTCTCCTGAGGACAAGTCTTTGGAAGATAAAGTTTGGGAGTTGCATCATCTTTTCTTAGAGGAAACACAGGGCTCATTCAGTGAGCTTGAAGAAAAATTGTTAGAGTTTCACCTTGGAAATCTGGAATTCAGCTGTGCTGCTCCTCTCAGCAAAGTGTCCTCCTTATCCTGGGACCAGAATGAAGAGTATCCTCAATTTTCTGGTGACCACACCCTTCTCCAGCATGGGTTTGGTGTCTTACTCAGCAACCTTGCTCAGGGTTTGGATATCAGGTTGAAATATGAGGTGAAAGAAGTTAACTACTCTGGCAATAAAGTTATCCTGACAAGTTCTGAAGGAAAGGAATTGACTGCAGACAAGGTAATTGTTACTGTTCCCTTATCCCTGTTGAAATCGGAAAGGTTAAAATTCACACCAGACCTCCCCAGAAGGAAACAAGCCGCAATAGAAAAGCTTGGAGCTGGACTCATAGAAAAAGTTGTTTTAAAATTCAAATACAATTTTTGGGAGAAAGTTGTCCAAGGAGCAGATTTCTTTGGTCACGTGCCACAGTCACGTGAGAGGCGTGGTCACTGTGGTCTTTTCTATAACCTCTGTGGAAAGAGCACTGAAAAAGGTAAAAAGACAAGTCATGTTTTGATGACAGTGTTAAGTGGAGAGACAGCCATACAAGCGCAACAGATGACAGACAAAGAGGTGGTGGATAAATGTATGGAGACCTTACGGAAACTGTTTCCTTATGAGATTCCAGAGCCCCAAGCTTATCTGGTTACAAACTGGGGCAAGGATCCTTATTCAGGAATGGCCTACTCCTATATTCCTGTTGGTTCAACTGGAGAGGAGTATGATCACCTTGCTTGTGATGTTGATAACAAGGTCTTTTTTGCTGGAGAGGCCACCAACCGGCAAAACCCGCAGACGGTGACAGGAGCTTACTTGAGTGGAATCAGGGAAGCTGCAAAGATTATATCATGCACTGAAAACAACACTTGA

Transcript

ANN17499-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8NB78	Lysine-specific histone demethylase 2 OS=Homo sapiens OX=9606 GN=KDM1B PE=1 SV=3
Q8CIG3	Lysine-specific histone demethylase 1B OS=Mus musculus OX=10090 GN=Kdm1b PE=1 SV=1
Q21988	Lysine-specific histone demethylase 1B homolog OS=Caenorhabditis elegans OX=6239 GN=amx-1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004919 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04433 all species →	SWIRM	SWIRM domain	Domain	Interproscan
PF01593 all species →	Amino_oxidase	Flavin containing amine oxidoreductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007526 all species →	Domain	SWIRM domain	Interproscan
IPR011124 all species →	Domain	Zinc finger, CW-type	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR001613 all species →	Family	Flavin amine oxidase	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR050281 all species →	Family	Flavin monoamine oxidase and related enzymes	Interproscan
IPR002937 all species →	Domain	Amine oxidase	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10742 all species →	FLAVIN MONOAMINE OXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0008134 all species →	Molecular Function	transcription factor binding	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19413	KDM1B, AOF1, LSD2; lysine-specific histone demethylase 1B	EC:1.-.-.-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.