Gene detail

Detailed information of ANN17500-RA in Leptoseris scabra

Genomic Location: Scaffold_10__2_contigs__length_57677642:52983914...52998520
NR annotation: KAJ7388524.1, RAD52 motif-containing protein [Desmophyllum pertusum]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4R856	RAD52 motif-containing protein 1 OS=Macaca fascicularis OX=9541 GN=RDM1 PE=2 SV=1
Q5U3G4	RAD52 motif-containing protein 1 OS=Danio rerio OX=7955 GN=rdm1 PE=2 SV=1
Q9CQK3	RAD52 motif-containing protein 1 OS=Mus musculus OX=10090 GN=Rdm1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009710 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF04098 all species →	Rad52_Rad22	Rad52/22 family double-strand break repair protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR040224 all species →	Family	RAD52 motif-containing protein 1	Interproscan
IPR042525 all species →	Homologous_superfamily	DNA repair protein Rad52/59/22 superfamily	Interproscan
IPR041247 all species →	Family	Rad52 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31164 all species →	RAD52 MOTIF-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10874	RDM1, RAD52B; RAD52 motif-containing protein 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.