Gene detail

Detailed information of ANN17754-RA in Leptoseris scabra

Genomic Location: Scaffold_9__1_contigs__length_46255593:1041531...1058122
NR annotation: KAJ7388610.1, Hemicentin-1 [Desmophyllum pertusum]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN17754-RA

ATGTCAGATATCTTACTGAGGTCACTTACTGTTTATATCTCTCTTTCTTTAACATCAGAGAAACCATTTGCTGTAATAAATCCAAAGTCATATCCCGCATTGAAGACAGGACATCATTTTACATTGACTTGTGTAGTCAGCGACGCAACCGAAGAGGTGAAGTGGAAGAAAAACGGCGCCACGGTAACTAGAAGGGATGACATCTCGAGAAGCTGTGACAAAAGCATTTTTGTTATTAAAAATGTCAAGCCAGAGGACAGTGGTTATTACGCATGCGAGGCTGTCAATCAAGCAGGCTCTGCTCTATCCTCGACTGTGGAGATCACAGTTACGGGTAAGATGGCATCTACTGCAGTTGAACCAATCATCCAAATATCAGGACCACTCCGCCCTGCTATTGAAGGAGGCAATGTTACTCTGACTTGTATCATTCTTGAAGGGTATCCAAAGCCTAGAATACAGTGGTTTAAGGACAAAATGCCTCTTGAAAGAGAGATCTACACAACTCTGGTCCTAACAGACGATGTGGACGATGACGGAAAGTACAACACAACTTTGGTCCTAACACAGATAAAATCGGACGATGAGGGAAATTACACCTGTAAAGCGGAAAATGGACTCGGTGGTGCTACTGACAGCATCTCTGTTATTGTTGACATTCCACCCGAACTAAACCCAGAACTCAAGGATCAGAATGTGTTGGTGAACTCCACACTAAAAATTAAATGCTTCGTCAGAGGTGATCCTCCACCAAAGGTTACCTGGATCAAGAATGGAGCAAGACGTCGCTACCATAAGAACATACTCATTATCAAGCATGTGAATTTCAGCGTTGCAGGCCAATATGAATGCAAAGCTGTAAACAGGGCAGGAAAGATCAACGCAGCTATTTGGATTGACGTGACAGCGGCTCCTCAGGTTGATGTTTTCCCAAGAAACCAAACTGTCCCTGAAGGCGAAACTACCAACATTAGCTGCAATGCCAGTGGTGTCCCAAAGCCAACAGTGAGCTGGAGTTTTGAGAATGGAGGCTTCCCCTCAGGAGCAACAGTTAACGATACTGAAAAAGAATCACTGCTTCAGTTACCAGACACTGTAAAACACATGGAGGGAGCATACAAGTGTACAGCAAAAAACAGAGTCGGAGAAGTAGATGCCATTTCAATTCTTTATGTAATAGAGAAACCAACTGCTGGCATATTCCCAAAGTCATATCCCATATTGCAGCCAGGTGATCATTTTACATTGACTTGCGAAGTCAGTGACGCAACTACCGAGATCAAATGGAAGAAAAACGGCGCCACAGTAACTGGAAGGGCCGACATCAAGAGGAACGGTGACAAAAGCACTTTTTTTATTAAAAATGTCGAGCCAGAGGACAGTGGTAATTACGCATGCGAGGCTGTTAATCCAGCAGGCTCTGCTCTATCCTTGACTGTGGAGATCAAAGTTGGGGATAAGATGGCATCTACTGAAGCGGACAAAATAGCAGGCATCAAGCTAAATGGTGATCAAGTGATGAAATTTTTGGAGAACTGCCAGATGGACGCTGAAGTGGTACTACATTGTTGGTCCTTTGTTGGCTGTAATATTTCTTACGTCAGTCGCCTGGTACATTCGCAAACGTCGAAGGGCAGCCAAGATGAAGAGCAGGGATATGAGGTGGATGTGTTGGATCATGAAGCGGATGAATGGGAGATAGCACGTGGCCGCATTCAACTTCGTGAAGTCATTGGCACAGGGGGATTTGGAGCAGTTTGGCGAGCAGCCTTGAGCCACCCAAACGAAGGACGTGGTAAACAGATTGTTGCAGCAAAATGCTTTACACCTACTTCTGGGAAGGAAGGAAGAAAAGCACTGATGAGGGAAATCGACTTGGGAAAACGTCTTGCCGAAAGTCCTCAGCCTAACATCATCAAATTCATCGGCTGTGTCACCACCGACAAACAGCTAAAGCGTTGGTTGAAATGCAGAGGACTCAAGCAAAGTGGCAAGCGACGGGATATTGTTGAGCGAGTCCGGGATTGTATAAATTCAGGAAATCATCGTTTGTTGGACGTTCGTATAGACGGCGGGAAATGGTATGCTGCTAAGGATCTAAGAGAAAACTCAGTAGCGCAGATGTCCGAAGGCAAACGAAAATGCATTGAAGATATTCATGTAGTTGCATTGCCGCCTGACTGGAATAATTTTCAGTCGAAGGAGATACCGTCCTATTTCAACTACGGACATACACATCATTATACTTTGGAATCTATTGAGAGTTTAGTTACAGATTACGACGAAGATGGGGATTGTGATCTCGGTCATATGACTGACAAACCATTAAAAAATGCTTGGAAATACGTAGACTCTGGATTCGTTCATGACGTTATGGTTGCAAAATCCAAAGATTATCATTTTGTACGTGAGCATGTGTGGCCTTCAATGAGAACGGAACTTCCACACAACGTGTCAGTTGTTTTATCAAACTTGAGCAGCGCAGTGATCCACGCTTCCTGTGAACCGTGTAAAGTTTCTGCCCTGGGCCGTTGTAGCCACGTTGTTGGACTTGTTGCTGTTTTGCTATTTGTTTTAGATCATGCTGAAAAACATGGTCATACAGCTTCAGTGGCCTGTACAAGCAAACCGTGCATGTAG

Transcript

ANN17754-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96RW7	Hemicentin-1 OS=Homo sapiens OX=9606 GN=HMCN1 PE=1 SV=2
D3YXG0	Hemicentin-1 OS=Mus musculus OX=10090 GN=Hmcn1 PE=1 SV=1
P11627	Neural cell adhesion molecule L1 OS=Mus musculus OX=10090 GN=L1cam PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000305 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13895 all species →	Ig_2	Immunoglobulin domain	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR050964 all species →	Family	Striated Muscle Structural and Regulatory Protein	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13817 all species →	TITIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN17754-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.