Gene detail

Detailed information of ANN17799-RA in Leptoseris scabra

Genomic Location: Scaffold_9__1_contigs__length_46255593:1632927...1641088
NR annotation: XP_015756901.1, PREDICTED: uncharacterized protein LOC107336333 [Acropora digitifera]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN17799-RA

ATGCTGAGTCACCTCATTAAGTTTGCGGTGGAAGGAGCCGCAGTCTTCGATTCATCGCTTGCAAGTTCTTTTTACGTGGACTCAGAAGATGATCCTGACGAAAGTGACGAACTAATGTTCTGCAAGAACAATGTCTGTGTTCATGTCTCATCTTTGAATGACTCTCACGTACCGGGATACTTCAAGTTAAACTCTAAAATGCGGCAAAGTGGCCACGTACGAATTACGGTTACGTGGACACCAAACTCTTACTTCTGCGACAGGAAGGGGGAACCGAATTTGGATGAGAACGGCATAGAGTGTAAGGGATTGCTCATTTCTAGCGGTTCGCTAGAAACATTTAACGTGGATCTCAGCGAAATGAAAACTCTGAGGATATTTTACAACCGGGATGACGAGACTTGTGGACAGCTAGTAATCGGGAACCATGAAAATCACTACAAAGTGTTTCATTTTCACCACGGCGGGATTGATCGGGTAACTCAGGTTTTAGAAGAGTGGGATTGGTGTTCACAAGTCATTGAACCTCTGGATCAAGAGGACCTTCGAAGGAAAACTTTCACGGTAATTTCTAAAAGGAATCCAAAACAAGGATTTCATCCGGAGGAAGGCAGATACGATCCTATGCCAATGCAAAAATGGAAAACTTTTTTGAATGACACTGGCCAGATTGAAGACGTGGCAAATTTCCGGAAGGCAACATTCTTTGGTGGTCTAAGTCCTGAAGTCAGAAAGGAAGCCTGGAAATTTCTGTTACAATACTTCCCATATGCTTCCACTTTTCAAGAGAGAGAACTGCTGAGAAATGAAAAGGAAGAAGAGTACATGCAAATAGATCATTCTAGGAAGAATCAAAGTGAAGACAAAAAAATGAGATTTTGGAAGGCTGTTGAGTGTACTGTTGACAAAGATGTTGTCCGTACAGACAGGTCGCATCCATACTTTGCTGGTAATGACAACCCAAATGTTGCCATTATGAGGAACATCCTCCTGAATTATGCAACGTATAATCATGAGGTTGGGTACAATCAAGGTATGTCGGACCTACTGGCGTCAGTGCTGGCAATAGTTCAAGATGAAGTTGACGCATTCTGGTGCTTTGTTGGGTTGATGGAAGGAAGTGTGTTTGTCACGTCACCTAAAGATGATGTCATGGACCGTCAGCTGTTGATCTCTCAGTTAATTCCCCGTGATACGTTTACAAGTGGTGGAGAATCCAAATCTCAAAAAAAAAACATGGCAACAATAGAGGAACTACAAGGAGTTGTGGCCGGACTCGTCAGCGTTGTGAAGGACCTCACTACAAATGTTTCTCAAGTCACTCAAACAGTCGGTCAGATGGCCGAAGCAGCTCCCACAGCCTCTCATCACGACAAGAATCAAGGCCTTCACATGCCTTCCATGCAACTTCCATCGTTCCGTCGAGATTCTGTGATACAAGACGACATATCCGAATTTTTGGAGCGATTAACCCAGCAAACATCGCATCTTCCCACCGAAACACGCTTGTCGCTTCTGGAACAGCAATGTGTTGGCGACTGGCCAAGGTCGGTGTTGTCAATCGCCAAAAGTACAGAGGGCTACGCAGAAAAAGAGCATGAGGACAAACTTAACATTTGTATCAAAGGATTACGTGCAGAATTCGGTGAATCCAAAGAAGACAAGTGCCGCCGATTAGCCGCCGAGTTAAGCGCTATCCAGCAAGAGCGTGGCGAGTCAGTGGAACAATTCGCGTTCAAATACAAGAAATTACTGCATCAATTGGAGAAACTTGGCGAAAAGATTGCGAAAGATTGTCCCACGTTTGCAATTTCTCAGTTTATTTCTAAAGTCAATTCCCGTGTTGCTCAGCAGGTCGTTGTGAAAGCAGCAGAATTTGAAACACTCGATAAGACCGTCGCAGCGGCTCGTCACATTGAGTTGTCATTTCAAACACCGCCCACCGCCTCAAATGCAAATCAGTCGCTCGATGAATGGAAAGTAACACCACCGAATGCCTTTGTTTCTTCGACCGCCATGAAATCTCCAGATCAGCAGTTCCAACGACAGCAGAGAGTTTGTTACACTTGTGGAGAAACAAATCATTTGTCACGGTATTGTCCGAAAAACCGCAAAGAAGCTTCAAAACAACCCGAGGTCTGCAACAATTACAATCGATTTCCGAAATCTAATTGTGAGGAAGATGGCAACAAGTGCTCATATGGTCGACAACACAAATGCCAACGTTGTAATAAATGGGGTTGTAAAGCTATCAGACATTCTGAAAATCGCCCGTCCAGCACATCTCGCAGCATTGTTCCATCCGGTGAGGTAAATTCTCTCAGGCAGCAACTTGTAGTCTTGTCTACTCGTCTGGCCAAATTCGAAGCTCAGTGTCCGGAAAAATCTTCATCTTCTGTTCCTGCGGTCTCTGAAAACCAAACCTCAACCTCAGCTTCACGACCACCTCCTGTAGTTACTTCTGATCAGCCATCATCATCTACTCCTTTATTTGGATTACCTGCTGTTACCATCCCTGCACCTTCGGCAACGCAAGAAGCTCAGTTACAACAGCGTAATATTCTGTGGACCTCTGTTACATCTGCAGGTCAACAGCTACCCTTACCCTTGGATAGCTGCTGTTCTGTATCTCTGGTGAGCAAAGTACATGCTGATTTTGTTGCCTCCAAACGGTCTGATCTCAAGTACTGTGCCCTACAGGAACCCATTTCTGTTACAGCTGCGGATCCAAAATCTAACCTTAAAGCAGTTGCCACCATGGAAATCCCCATCACATGGGAAACAAAAACGGAAACTGTCTTCACTATGCTCGTTGTTCCAGGCCTTGTCTGGCCAATACTCTTTGGGGAGAACCACCTTCACGCAACTCAAGCATTGGTTGATCATTATGTTCCATGCATCACCTTTCGACATCCCAGTATGCAGTTTCGTGTCCAGTGCTCTCTCGACAATCCACTTCAAGGCTTCACAAGAGTCTCAGCGCCCAATGGGTCCTCATCACATGAAAGTGGAGCGACAGTGCAAAAGCCACATGTCAGTGTTACATGCCTTCTTACCGGAGCACCACCACCAGGTGTTCACAAGCATTCACAATCCCTTCACCGTGGTCTTAACTTTCTTACAGTCTGCATTACACTTTCTGCAGCTTTCATGGGATATCAAGCAGTGCGTCAACCATTATGGATTGAGGGCAAAGAGATTCAACCAGGCGTTAAAGTCCTCAGTGGTCCCTTTGATGTGAGCGAAATTTCAAGTCTTACAATGCCAGAAAGCGCACGCCCTAACAGTGACCCCTACTACAATGTACACCTCATAGACCTTCCTGAGACACCAGCTTCCGTTCACACAGAGGAAGTTCCTGACATGCGCATCACGTATTGTACAACTTTGGCAGTGGAATCTAAGTTGAAGAAGACAAGTATCCCTGAGAATGTCATTCTTGGTAATGTTCGAGACATGTCAAAGGATGATGATGCAGCAGCTCATGATCTCAGAAATCATGAAGACCAGCCACCCAACACAGAGACTGTTACCACTCCAGAATTACCCACCCAAAAGAGTACAGCGAATCCGATTGATCCTGATTTGGCAAAGGTAGCATTTGCTTTTGGAGAGTATCTGAACACTCTACCACGTGCACAGACATATGCTTTAGAGGCCTGCAAAGCAGTGTACCAGCAGATTCCAGATGCCCAGGAAATTTTGACACGTTGCGGAAAACTAAAAGGACTGATTTCAAAGTGCCCTTATCTATCCATGTCTGGAGGCTCACATGGAGGAACTTATCTGTTAAAACTTGACAAAGACATGTTTGCAACTTTAACATATTTCCGTGAGTTGTTGCGCATGTTAGAACCGGAGTTCTACGCTCATCTTCTGCTCCAAGACGCCGCCATGGACATGCTCTTCTGTCATCGCTGGCTGCTCCTCTCTTTCAAGCGAGAATTCTTCAACGAAGAAGTTCTAAAAATGTGGGAAGCGTGCTGGTCGCGCTACCAAACGGACTATTTCCACATCTTCTTGTGTGTTGCCATGGTTCAGGAATATGGCAAGGAAGTTGTGGAGCAGGACATGCCAGCCGATGACATGCTGCAGTATTTTACTGATCTGTCCATGAAGATGGACGGTACCAAGGTTCTGCGCGTTGCTCGTCAGCTTTTGTTAAAATTTCGCCAGTTACCCGGGATACCTTGCTCGCTGCGTGGACTGCTGTCTGGACCGGGGATCTGGGACAGCGCACCATTACCCGAGATTCAGTGTAGCTGTCATGAGAGATGCCTGTACTTGTATGGTGAATTAACAGATCAAGAGGAGATGAATTCAGCGGAAACAATCACAGTGAACAAAAAACTGTCTGTGGACGTAGACCAGGGATCAGAAAACTTGGCTCGTGACAATGGTGAAGTGGAGAAAGCAACCTTAGATTTACAACAACGTGTTCAAATTTGTGAAACAAATGGTACGGATAGTTACGAATCGCAGCCTGAGCCAGTCATTGGCGGCGAAGGTGATGATGAGGATGATGATGATGCGTCACGAATGAAGGAAAACATAAATGAAGCGCGGCAAGATGCAGATGGTGCTGCTTCGGACGAAGAAGAAGGTCAACTAGAACAACAGGCTGCTAAAGATGAGAAAGAAGAAGTTACTGATAGCTAA

Transcript

ANN17799-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8TBP0	TBC1 domain family member 16 OS=Homo sapiens OX=9606 GN=TBC1D16 PE=1 SV=1
Q8TC07	TBC1 domain family member 15 OS=Homo sapiens OX=9606 GN=TBC1D15 PE=1 SV=2
Q9CXF4	TBC1 domain family member 15 OS=Mus musculus OX=10090 GN=Tbc1d15 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005712 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00566 all species →	RabGAP-TBC	Rab-GTPase-TBC domain	Family	Interproscan
PF12068 all species →	PH_RBD	Rab-binding domain (RBD)	Domain	Interproscan
PF00098 all species →	zf-CCHC	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000195 all species →	Domain	Rab-GAP-TBC domain	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR035969 all species →	Homologous_superfamily	Rab-GAP-TBC domain superfamily	Interproscan
IPR021935 all species →	Domain	Small G protein signalling modulator 1/2, Rab-binding domain	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22957 all species →	TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005769 all species →	Cellular Component	early endosome	Interproscan
GO:0090630 all species →	Biological Process	activation of GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN17799-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.