Gene detail

Detailed information of ANN17907-RA in Leptoseris scabra

Genomic Location: Scaffold_9__1_contigs__length_46255593:4169294...4184999
NR annotation: CAH3164041.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN17907-RA

ATGGCTGACGATCGCTTTAGCGTCGTTGACTATGTTGTTTTCTCCATCATGTTGTTGATCTCTGCTCTGATCGGAATATGGTATGGCTGTGGACCTGGAGGAAAGCAGAAGACGACGGCCGAATACCTCCTGGCGAATCGCAAAATGCGCTACTTCCCGGTAGCGATTTCTTTGTTGGTGTCTTACCTCTCAGCTATAACGCTGCTCGGCGTCCCATCTGAGATCTACACGTATGGCGCACAGTATTATGTGTTGATCGTTTCGTACTTCATCATTTGCGGAACTGTGGCTATTATTTTCGTTCCTATGTTCAGACGTGTGAATATTACCTGCGCTAATGAGTATTTGGAGCTCCGCTTCTCTGTTGGAGTCAGGATGGTGGGATGCGTATTCTTTCTTCTGGAATATATATTGTACCTATTCGTTGTGCTCTATGCACCATCTCTTGCCTTAGAAGCTGTTGCTGGAATTCCTTTATCAGCCTCTATTCTTACAACAGGAATAGTGTGTACCTTCTACACAAGCCTTGGAGGTCTGAAGGCCGTTATTTGGACAGATGTGTTTCAGTCGATGATCATGGTGGCAGGGATGGTCATTGTTGTAATTGTTGGGAGCATTGAAGTTGGAGGCTTTGATAAAGTTTGGCAAATCAACAAGGACTTTAACCGACTCAATTTCTTTGACTTTAACCCTGATCCAAAGGTGCGTAACACATTCTGGACACTGACGCTCGGTGGTGCATTCACTGCAATGCCAGTCTGGACCGTCAGTCAAACAGCTGTTCAACGTTTCCTCGCCATCAGGACATTCAAGGATGCACAAAGGGCGGTCTGGCTGAACGTTCCTGGCCTGATCATTATTGTGACGCTGTGCTGTTTGGACGGACTTGTGATTTTCGCTGTGTATTCCGGCTGCGATTTACAAGTGCAAGAAAAGATTACCAGCAATGACCAGACTCTCCCATACTTCGTGATAAACAAACTCGGTCACCTGAAAGGACTACCTGGAATGTTCACTGCCTGTCTGTACGCTGGAGCTCTAAGTACAGCATCCTCTGCTCTGAATGCCATGGCACTTGTCACCTTGGAAGACATCGTCAAAAAGAGAGTCCCAGATATAACTGATAGTGATGCTGCCAAACTATGCAAAATTGTTGCCCTCTCTTTCGGAGTCATTGTGATTGGAGGAGCTTTTGTCGTGAAGTATGTGGGCACCATGGTTTTGCAGCTGGCGTACAGTATCTTTGGAATCTGTGGAGGTCCTCTGTTGGGAACATTTTTCCTTGGGATGTTTGTCCCGCGAGCTAACTCTAAGGGTGCATATTTTGGAATATTCACCGGTGCTGCCTTGACAACCTGGGTGTTCCTTGGATCCGTGTTATATCCACCAAACAAATACCCAGGTCTCCGCTCTGTTCGTGGCTGTGACTTCTACCAAGAAGCGTTAAATGCCAACGCAACGTTTCCTAATGGCACCATTAACAACGCCTCGGCTGCAGTTTTTGAGGAATGGGGAGATGGGTATATCAGGAATACATTCAAGGGACACAGTGAGGCGATCGCAGATTTCTACAGCATGTCGTATCTCTGGTTCAGCGGCTTGTCTGTTATCGTCTCCTTTGGCGTTGGATGCATAATGAGTTTAATTCTTGCGAACAAGGAAGACAAGGAGAGGGAAATTGATCCCAAATTGCTGTTTCCGGTGAAGGAGTGGTTTCTAGGTTTCCTCTCCGGTCGCTCTTTTAAATGGGACTTCGTGGAGGAAGAAGAACGACGGATACAAAAGGCAGACGAGCAAGAAATGATGCCTATACATGAGAAGGCCATAGATATTGAGAGTTGTGATGTCGAGCATATTACTTATCTTAATTCTGTTTTCGGAGTACATTTGTACATTATTTGGGAGCTAGCTCAGTCTGACCTAAAAAAATTTACACCAGCGGAGATCAAGATCAACTGGGATGATGGAGGTCCCCCCGTCCAGGATACTGAGAGCAAGAAAGAGATGGGACAAATATTCACTGATGAACTTCTTGAGAATGATGCCAAATAG

Transcript

ANN17907-RA

Protein

Uniprot

Uniprot term	Description
Q9XT77	Sodium-dependent multivitamin transporter OS=Oryctolagus cuniculus OX=9986 GN=SLC5A6 PE=2 SV=1
O70247	Sodium-dependent multivitamin transporter OS=Rattus norvegicus OX=10116 GN=Slc5a6 PE=1 SV=1
Q9Y289	Sodium-dependent multivitamin transporter OS=Homo sapiens OX=9606 GN=SLC5A6 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00474	SSF	Sodium:solute symporter family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018212	Conserved_site	Sodium/solute symporter, conserved site	Interproscan
IPR001734	Family	Sodium/solute symporter	Interproscan
IPR038377	Homologous_superfamily	Sodium/glucose symporter superfamily	Interproscan
IPR051163	Family	Sodium:Solute Symporter (SSF)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42985	SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0006814	Biological Process	sodium ion transport	Interproscan
GO:0015293	Molecular Function	symporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14388	SLC5A8_12, SMCT; solute carrier family 5 (sodium-coupled monocarboxylate transporter), member 8/12	-	Transporters	ko02000	deepkoala