Gene detail

Detailed information of ANN17993-RA in Leptoseris scabra

Genomic Location: Scaffold_9__1_contigs__length_46255593:5528361...5539981
NR annotation: CAH3017346.1, unnamed protein product [Porites evermanni]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q641G4	Condensin-2 complex subunit H2 OS=Xenopus laevis OX=8355 GN=ncaph2 PE=1 SV=1
Q28GV1	Condensin-2 complex subunit H2 OS=Xenopus tropicalis OX=8364 GN=ncaph2 PE=2 SV=1
Q6IBW4	Condensin-2 complex subunit H2 OS=Homo sapiens OX=9606 GN=NCAPH2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007585 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16869 all species →	CNDH2_M	Condensin II complex subunit CAP-H2 or CNDH2, mid domain	Family	Interproscan
PF06278 all species →	CNDH2_N	Condensin II complex subunit CAP-H2 or CNDH2, N-terminal	Family	Interproscan
PF16858 all species →	CNDH2_C	Condensin II complex subunit CAP-H2 or CNDH2, C-terminal wHTH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031719 all species →	Domain	Condensin II complex subunit H2, middle domain	Interproscan
IPR031739 all species →	Family	Condensin-2 complex subunit H2	Interproscan
IPR009378 all species →	Domain	Condensin II complex subunit H2, N-terminal	Interproscan
IPR031737 all species →	Domain	Condensin-2 complex subunit H2, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14324 all species →	CONDENSIN-2 COMPLEX SUBUNIT H2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000796 all species →	Cellular Component	condensin complex	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0010032 all species →	Biological Process	meiotic chromosome condensation	Interproscan
GO:0030261 all species →	Biological Process	chromosome condensation	Interproscan
GO:0051306 all species →	Biological Process	mitotic sister chromatid separation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11490	NCAPH2; condensin-2 complex subunit H2	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.