Gene detail

Detailed information of ANN18044-RA in Leptoseris scabra

Genomic Location: Scaffold_9__1_contigs__length_46255593:6487737...6509668
NR annotation: XP_020603864.1, AP-2 complex subunit alpha-2-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN18044-RA

ATGCCTGCCGTAAAGGGAGAAGGAATGCGCGGTTTAGCCGTGTTTATTTCTGATATTAGGAACTGTAAGTCAAAGGAAGCAGAAATGAAAAGAATTAACAAGGAACTTGCCAATATTAGGAATAAATTCAAAGGTGACAAACAGCTAGACGGGTATCAAAAGAAAAAATACGTCTGCAAGCTGCTGTTTATATTTCTTCTGGGCCACGACATCGACTTTGGTCACATGGAAGCCGTAAATCTCCTCTCGTCGAACAAGTACACAGAAAAGCAAATCGGTTATCTCTTCATATCAGTCCTTGTAAGTGCAAACAGTGAGTTGATAAAGCTGATCATCCAAAGCATCAAGAACGACTTGTCCAGCCGCAACCCCATCAATGTCTGTCTAGCGCTGCAGTGCATAGCAAACATTGGCAATGAAGAAATGGTCGACGCAGTGGGAAAAGAGGTTCCAAAATTGTTAGTTTCCCCAGACACAAATGACAGTGTCAAGCAGTGTGCAGCTCTTTGTGTTTTGAAGCTTTTTAGGCTGAAAAGTGATATCTTGCCACCTGGAGAGTGGACATCAAGAATCGTGCAGCTCCTCAATGATAAACACTTGGGTGTGGTCACCTCTGCAGCAAGTCTTATTCAAGGTGTTGTTCATTATTACGCTGACGATTACAAGGGCTGTGTTCAACTAGCAGTGTCAAGACTGAGTAGGATTGTGACGTCATCCTATACTGACCTTCAAGATTACACCTATTACTTTGTTCCGGCGCCATGGCTGTGTGTCAAGCTGCTTAAACTTTTACAGTTGTATCCTCCACCTGATGACCCAGCAGTCCATGGAAGATTGAATGAATGTCTGGAAACCATTCTTAACAAAGCACAGGAACCACCCAAATCAAAGAAAGTCCAACATTCAAATGCCAGGAATGCTGTGCTTTTTGAGGCCATAAACCAGATTATTCACATGGACAGTGAGCAGAGCTTGTTGATTAGAGGCTGTAACCAGCTGGGACAATTTTTAACACACAGGGAAACCAACCTGAGGTACCTTGCTTTGGAGGGTCTTTGTCTCATGTCCAACTCTGAGTTCTCAGCTGATGCAGTCAGGAAGCACCAGGAGACCGTTGTTTCGGCACTGAAGACTGAGCGAGATGTCAGTGTCCGTCAGAGAGCTGTTGACCTTCTTTATGCCATGTGCGATAAGAACAACGCAGAGGAGATTGTATCAGAAATGCTGACCTACCTGGAAACAGCTGATTACTCCATCAAGGAGGAAATGGTGTTGAAAGTTGCAATCCTTGCAGAGAAGTTTGCAACAGACTATTCCTGGTACATGGACACCATCTTGACACTAATTAGGATTGCTGGAGATTACGTTAGTGAGGAGGTGTGGTACCGTGTGATCCAGATAGTCATTAACAGAGACGATATTCAAGGTTACGCAGCTAAGACAGTGTTTGAAGCCCTGCAGTCTCCATCGTGCCACGAGAACATGGTTAAAGTAGGCGGCTACATCTTAGGAGAATTTGGAAATCTTATCGCCGGTGATCCACGGTCAAGCCCCATGGTTCAGTTCCAGCTCCTTCACAGCAAGTTCCCACTGTGTGCTTCATCAACAAGAGGTTTACTGATGTCAACATACGTCAAGTTTATCAACCTCTTCCCAGAAATCAAAGGACACATCCAAGAGATTTTGCGCAGTGACTCCAACCTTAAAAATTCAGATGCAGAGATTCAGCAGAGAGCTCTGGAGTACTTGAAACTGAGTACTGTTGCATCCCCTGATGTTTTGGCCACTGTCCTTGAAGAAATGCCACCATTCCCTGAACGCGAGTCATCCATCTTGGCCAAGCTGAAGAAGAAGAAGCAGGAGAAAACTGGCATTGTGGAGAAAGAAGAGAAAGCTGAACCAGCTGAAAAACCTACGGCAAATGGACAGGTTCCTGTCGCTAATGAGATCACCGCTCCCAATCCAGCATTACAAGCAGATCTGATTGGTACGGGAACTGCTCCTGTGACAAACAACTTTGCAGCACCAGAGACGGGCGGAAGTCTTCTGGTTGACGTGTTTGACATGCCAGCGGCAGCAGCTCCTGTAGTGGGAGGCATTCCATCCGTTACACCTGGTGCAGAGGAAAATCTGAAGAAATTTGTGTTTAAAAACACTGGAGTTCTATTTGAAAATGACATCCTTCAAGTTGGTATTAAATCGGAGTTTACGGACGGCAAGGTTGTGGAAGGTGGAGCTCAGATGAAACAGATGATCAATACAGAATGCATCATGGAATTCAATGAGCAGCCACTGATAGATCTTCAATTCAGCGTGAATGGCGTGGGCCAAAGAATTGCCCTTCCCCTGCCCCTATTTGCATCCAAGTTCTTCGCACCTACAGAAATGAACTCGCAAGACTTCTTTTCAAGATGGAAGCAGTTAGGAAACCCTGGGCAAGAGAGTCAGCAGATTTTTAAAGCTAGGTTTCCGATTGACACAGAAACAATAAAAACAAAGCTGTCCGGCTTTGGAATGTCCTTGCTTCAGAATGTAGACCCTAATCCTGAGAATTTTGTTTGTGCCGGAATAATCAAAGCACAAGCGATGCAGATTGGAACGCTGCTTCGGCTAGAACCTAACAGACAAGCACAGATGTTCAGACTGACAATACGAAGTTCAAGAGCTGATGTTGCTAAATACCTCGCAGAAATCTTGGTAGACCAGTTTTAA

Transcript

ANN18044-RA

Protein

Uniprot

Uniprot term	Description
Q0VCK5	AP-2 complex subunit alpha-2 OS=Bos taurus OX=9913 GN=AP2A2 PE=1 SV=1
P18484	AP-2 complex subunit alpha-2 OS=Rattus norvegicus OX=10116 GN=Ap2a2 PE=1 SV=3
P17427	AP-2 complex subunit alpha-2 OS=Mus musculus OX=10090 GN=Ap2a2 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02296	Alpha_adaptin_C	Alpha adaptin AP2, C-terminal domain	Family	Interproscan
PF01602	Adaptin_N	Adaptin N terminal region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR003164	Domain	Clathrin adaptor, alpha-adaptin, appendage, C-terminal subdomain	Interproscan
IPR002553	Domain	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Interproscan
IPR009028	Homologous_superfamily	Coatomer/calthrin adaptor appendage, C-terminal subdomain	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR013041	Homologous_superfamily	Clathrin adaptor, appendage, Ig-like subdomain superfamily	Interproscan
IPR050840	Family	Adaptor Complexes Large Subunit	Interproscan
IPR017104	Family	Adaptor protein complex AP-2, alpha subunit	Interproscan
IPR012295	Homologous_superfamily	TBP domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22780	ADAPTIN, ALPHA/GAMMA/EPSILON	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0030131	Cellular Component	clathrin adaptor complex	Interproscan
GO:0030117	Cellular Component	membrane coat	Interproscan
GO:0030122	Cellular Component	AP-2 adaptor complex	Interproscan
GO:0035615	Molecular Function	clathrin adaptor activity	Interproscan
GO:0072583	Biological Process	clathrin-dependent endocytosis	Interproscan
GO:0140312	Molecular Function	cargo adaptor activity	Interproscan
GO:0015031	Biological Process	protein transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11824	AP2A; AP-2 complex subunit alpha	-	Exosome	ko04147	deepkoala