Gene detail

Detailed information of ANN18380-RA in Leptoseris scabra

Genomic Location: Scaffold_9__1_contigs__length_46255593:14484174...14486605
NR annotation: PFX17945.1, Retrovirus-related Pol polyprotein [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN18380-RA

ATGAGTTGCTCAACGCCAACTAACCCTTTCAAACCGGGGAACCCGTTTACACCAGCAATTGATTCATCCCTGGATTCATCAGTAAATTTTGAAAGTCCACATCGCCGAATTCACTCTGCAAACCCGTTCGCATCGGAGAACCAACTGGACAATTCTTCAGCTGATTTGTTTACACCCCGCCAAAAGTTTACCAAACCTGTTAAAAATCCTGCGGATTATGATGGTACGCAGTCGCTACGAGATTATTTGAAACACTTTGAGCGTTGTTCTGTTGTTAATGGCTGGAGCAAAGATGAAGCTGCTGTTTTCCTGGCCGCAAGCCTTCGCGGCGAAGCTCAAAAGGTGCTAAATGGCATGTCTGATAGCGATTGTCGAAATTACGCGAAGATTGTTGACAAACTGGAGCTTCAGTTCGGTGTCGAAAAACAACGCGAGTTACATCAGGCGCGTCTACACAACCGTAGACAACAGGAACATGAAAGTGTTCTTGCTGCAGATATCCGCTGTATGTCCAGTCTGGCATATCAGGGTTTATCTCCTGACACTCAAGAAAGATTTGCCGTCCAGCATTTTATTGATGCTATCAAAGATGAAGACGATCGGCTGCCACTACGCAGAGACAAACCATGCAGCATGGAAGAAGCCTTGTCACTGGCTTGTGAACTTGAGGCATTTCGTCTCTTGGATGGAGATTGGCGAAGAGGCTTGGTGAAGGTTCGCTCTGTGGATGAAGCTGTCAGGGAGCCTGATTTATTTAAAGCTCAGTTGGAAATGTTGCGTAATGATATCCAAATGCAACAACAACGTCAAGAGACTCCGCAAGTCGTTCTCCAACAGTTGGTTCAGAACATACAGCAGCTCACTCAGTCAATGTCTCTGAACACACCTGGAAGCCAAGAACGCCTACCTGCTTCACGTTATTCCAGTCAATGCTGGTATTGCAACGAGTCTGGCCATTACCGTCGTAACTGCCCAAAATACAAGTCTCTGAAACAAGCCGATCTGGGTTCGGGAAACGCCAGCAGGGTGTCGCCCACAGGCCAGGGGGATGCCAGAATGAGACTAACCCTGCAATTGCTCTTGCTAATACAGCAAGCAAAAACACATGGTGTGGGACATGTTGTAGTGCGCCTGGGTACTAAGGAGTTTCAAATGCATTTGGTTGTGGCTGAGATTGAGGATGAGGGCATTCTGGGTATGGACTTTTTGTCACAAGCTGATTCTCGTATTGACATTGTGAAAAACCAAGTGTCGATTAATGGAGAAGTGTTCGATTGTTCTGATTTCAAGAACCAGCCTTTAAGCTCCAGATGTGTGGTGCGACGAGCAACAATTATTGAACCTAACACTGAGGTGATTGTCCCAGTTACTGTTCACAAGTGTTGTACTAACTTAGATCCAAAGGCCTCTCAGTTAGGCATGCGATTGTTGGAGCCTTGTCTCAACTCTCATTTGCAACAAAAGGGCCTTTATGTTGCAAGGACTCTGGTGGATGTTAAAGAGGACAGAGTGGTTCCTTTGCGTGTTTTCAATGTTTCTGATGAGGTTTGCAACTTAGCTGCCGAGACTGTGGTTGCTCTAGCTAAGCCAGTTGTTGATGTCACTTCACTGAAGCTTTATGAAGAGAATGATGAGCATGTTGTGGACCAAGCTCGAGTAATAAGTCAGCATGTATCACAAGGAACAGTTGAAAGGACTCTACCAGAACCATTACAAGATTTTCTTGGAAGGAGCACTGAGTATTTGACTGACAGTGAGACTGAGAGACTGCAGGAATTACTGTTCGATTACCAACATGTGTTCTCCCTTTCTGACAGAGACTTAGGCACCACACATATGGTCCAGCACAGAATTGAAACAGGCAATGCCCCCCCAATCCGACAGCAGCCTCGACGTACCTCTTCATGGAAACGTGATGAAATCGAACGACAAGTAACAGATCTCTTGCAACAGGAAAAGGTTAAAGAATCATCAAGTCCTTGGTCCTCTCCAGTTGTGCTGGTGACTAAAAAAAATGGTAGTCAGAGGTTGTGTGTAGATTACCGCCAGTTGAATGCAGCAGCAGTGAAGGATGCCTTCCCTTTGCCACGTGTTGACGATTCACTCGCTGCTCTAAGTGGCTCAAGATGGTTTTCCACCTTGGATCTCGCCTGTGGTTACTGGCAAGTGACAATGAATGCACCCAGGAAAAGGCAGCATTTGTAA

Transcript

ANN18380-RA

Protein

Uniprot

Uniprot term	Description
Q7LHG5	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2
Q99315	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19963	CCHC-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan