Gene detail

Detailed information of ANN18442-RA in Leptoseris scabra

Genomic Location: Scaffold_9__1_contigs__length_46255593:16195687...16215994
NR annotation: XP_027039360.1, eukaryotic translation initiation factor 3 subunit B-like [Pocillopora damicornis]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN18442-RA

ATGATCGGGAAAATGGCGGACGAGAAAGAATTTGATGAAAAGGCGGCTAGTAGCGATTCAGAAGAGGGGGATGACGACGAAGAAGACATGAGTAATGAGAAAAACGATGTTGGGGACGATGAGTCGGAATTTGATGATCCAGAGGGATTCGTAGACGATATTACGGACGAAGAGCTGCTGGGAGACATCTTAGGGGAAAAACCAGTGGAAGTTCTTGGAACGGATTGTATTATTGTTGTGGATAATGTTCCTACCATCCCACCAGACAGACTGGATAAGCTCAAAAATGTCATCAGAAAGGTGTTCTCCAAGTTTGGAAAGATTGTCACTGAGCACTATCCCCAAGATGACAAAGGGCACACCAAAGGGTATATATTCTTGGAATTCTCTAATGCTAAAGATGCTGCACAGGCAGTTAAAACAGCAAATGGTTACAAGTTAGACAAGCATCACATATTTGCTGTCAATCACTTTGAGGATTTTGACAAGTTGGTGAGTCTAACAAAGGATTGGGAAGCGCCGACCAAACAGGCATATGCTGAACAGGAAAACCTGAGATCATGGCTTTTAGATCCAGATTGTAATGACCAGTATTCTGTGATTCATGGTGGAGGAGACAAAGTGGCAATCATGTGGAACACTCCACAAGAACCTATACTGTCAAAAGAAAGAATGAACTGGACAGAAACTTATGTACGTTGGTCACCTAAAGGCACATACCTAGCCACTCTTCATCACCAGGGTATTGCCCTGTGGGGTGGGGAAGAGTTCAAGAGGATTATGCGATTCAGCCACCCAGGGGTTCAGCTTATAGACTTCTCTCCTTGTGAAAGGTATTTGGTGACCTTCAGTCCCTTGGCTGATAATCCTGATGACCCACAGGCTATTGTTGTGTGGGACATAAGACCAGGAACTAAAAAGAGAGGATTTTTATGTGGAGATCAGTCTCAGTGGCCAGTGTTCAAGTGGAGTTCTGAAGGCAAATACTTTGCGCGTTTAGGAGAAGACAGCATTAGCATATATGAAACACCCTCTTTTGGCCTTTTGGACAAGAAAAGCTTAAAGATCCAAGGAGTAAAAGATTTTGCATGGTCACCAACGGATAATGTTATAGCATTCTGGGTTCCTGAGTACAAAGACACTCCAGCACGCGTCACACTGATGGAGATTCCAAGTAGAAAAGAAATCAGAGTTAAAAATCTGTTTAATGTTTCTGAGTGTAAGATGTTCTGGCAGCAAAAGGGAGACTATCTTGGTGTAAAGGTAGATAGATACACCAAGAGTAAAAAGGGCCTGTATTACAACCTTGAATTGTTCCGTGTTCGAGAAAGGCAGATTCCAGTAGATGTTGTGGAAATGAAAGAGGCTGTCAGTGCATTTTCATGGGAGCCTGGCGGTAGTAAATTTGCTATAATTCATGGTGAAAGTCCAAGAATATCTGCTAGCTTCTACAACATGGAGAAACATGGAAGTGTAACACTTTTGAAAACATTTGATAAGAAGCAAGTCAATAGTATATTCTGGTCACCAAATGGACAATTTTGCATTCTTGCTGGTCTTAGAAACATGAATGGTGTTTTAGAATTTTATGACACTTCAGATGTGGTGTGCATGAACCAAGCGGAGCATTTTATGGCGACTGATGTGGAATGGGATCCCACTGGCCGATATGTAGCCACTTCCGTCAGTTGGTGGGCGCACAAGGTGGATAATGGTTACTACATTTGGTCATTCCAAGGAAAGCTGCTTCAGCGTCACGCCTTGGATCAATTCTGTTCACTTTTGTGGAGACCCAGACCTCCCGCTTTACTCTCAGATGATGACTTGAAGAACATCAAGAAGGACATCAAGAAATACCAACGTATGTTTGAGATCAAGGATCGAATGAGCCAATCACGAGCCTCAAAGGAGCTGATTGAGAGGCGGCGGCGAAAGATGAAAGACTTCCAGGGTTACAGACAAAAGAAGAACAACGAGTACGCGCAGCAGAAAGCACAGCGCTTGGATTTACGAAACGGTATCGAGACGGACGAGCTAGATAGCAATGCGGAGGAGTTTGAGGATGAATCGGTGGAGTTCTTTGTCAAAGAAGAGATCACCGAAGTGGAAGAATAG

Transcript

ANN18442-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8JZQ9	Eukaryotic translation initiation factor 3 subunit B OS=Mus musculus OX=10090 GN=Eif3b PE=1 SV=1
Q4G061	Eukaryotic translation initiation factor 3 subunit B OS=Rattus norvegicus OX=10116 GN=Eif3b PE=1 SV=1
P55884	Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens OX=9606 GN=EIF3B PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006577 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08662 all species →	eIF2A	Eukaryotic translation initiation factor eIF2A	Repeat	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR011400 all species →	Family	Eukaryotic translation initiation factor 3 subunit B	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR013979 all species →	Domain	Translation initiation factor, beta propellor-like domain	Interproscan
IPR034363 all species →	Domain	eIF3B, RNA recognition motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14068 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0005852 all species →	Cellular Component	eukaryotic translation initiation factor 3 complex	Interproscan
GO:0006413 all species →	Biological Process	translational initiation	Interproscan
GO:0031369 all species →	Molecular Function	translation initiation factor binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03253	EIF3B; translation initiation factor 3 subunit B	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.