Gene detail

Detailed information of ANN18467-RA in Leptoseris scabra

Genomic Location: Scaffold_9__1_contigs__length_46255593:16619712...16651795
NR annotation: CAH3162788.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN18467-RA

ATGAAAGTTAACGGTGGCGCTAACTCGTCCGGAAAGGACAGAAAACGGAAAATTTGTAGCGAACAAGGCGACGAACAAGATAGGGGCAGTTCTAGGCCAGAAAACTGGACAAAAGTCCCTCAGAGTGCATCTCGACGCCACAGAGAAAAGATAAATGCAACCTTGGAAGAGCTAGGAGGCCTTCTTCCACTGTCAGAAGAGGCAAGATCAAAGTTGGACAAACTCACAGTATTGAAATTGTCAGTCAGCTTTTTTCAAACTCAAAATTATCTCCAATCTGGAAAGAGGAAAAGAAGAGTTGATGATGCTGCAGTTACTGAGATAACCAATAAACTTGCAGCATGTAACATCAATGTCAGTGACATTTCATTAGAGGTTTTGGATTCTTTCTTCTTGGTGCTTTCAGATACTGGAGATGTTTTCTTTGTTTCAGAGAATGTCTATCGATATCTTGGGTATACCCAGACATTTTTGATGCACCAGAATTTCCTCAATTTTGTGCACCATGAAGATGTTGTAGGATTTGAAAAATCCCTTCGACGAGCTGCAAGGGCGAGGATCACAGAGTTGGAAGATGGACAAAGTATTGACTGTGAAGAGTTTGAAGAACAACCACTTGCCCAGACGTGCTTTTGTAGCATCAGGTGCCATGCTGGTAGGCAGTCAAGTCATGTCAGCCCCTTCTATTACAGGTCATTTAAACTTGATGGCAACATCAAGCCACTGCTGAGCGGTAAAATGAAACAGTATGGATTTTTTGCCCTATGTACGCCTGTCAACCCAGCAAACCCATTTACCAGTACTCCTAAGGAGTTACTACAACTGTACAGCTGTAAGCTTGGTCTTGACCTCAGTGTTAAAAAGCTGGATAACAGGGGTCAAAAGACTTTGTACCTAAATGAAAGGGACATATTAAGCCAGTCGGGGTATTTTTTTGTTCATCCTGATGATGCTCAACTTATGGTGGTTTGTCATCAACAAGTTACTACTGATGGAGAAAGCAGTGAAGTCGTATTTCGGCTTATGAATGGTCAAGGACAATGGCAGTGGATAAGAGGGAAGGCTAGAATGTTGTTCGACAAAAATGGCCACCCTGAATCCGTCGCTACAGATAATGTTCTTTTAAACGATGAGCAAGGCCCTTACTTTCGATCAGTCTCCGCCGAAGCGCAACATGAATGGAAAACGAGGCAAAAGAGCCTTCCTTCACCACAAACTGATGATGAGAAAACCAGTCAGGAGAGCAACCCAGACTCAGCGCTTCCACCTTCGTCAGCAACAAGCGATGGTATGAGCTCTGCTGGACAAGGGTTCAGAGCACCTTCTGAAGAGGATACGTTGCAAGAGTCGAAGGACATAGAGATTATCGAACACATAAGCCCACCTATCTCAGTAGAAGAGAAGAAAGCGCATGTGCTGCCATCTCTAAGCCACACAGCGGGCACATCAGAGTCGTGCATGTTCAGCTCACCGCACGTCAACAGGTCACCAGTGGACGAGAAACCAAACATCCTGTCACATGATGGAATCACTGTCAACTTCAAGGTCGAACGCAGGAATGGTGATGCGACTCATGCCAACCCAAAACGGAATCACACAGAACACGATCAAATAAATCTCATTAAACAGTTCCTGATGGGAGAAGATAATCAACCTCCTCCAAGTGCTTGTCAACTCGGAGGTACTGTCCGGGTAGACGGCGGCCTAATTCGTGATAGTCCTCCTCCGTGGGCTAATTATCCTATAGACGCATCATCAGTCATTCCAGAGTTAAATTTCCAGCAAGACAACAGGTCTTCTGCTCCATGTCCGCCCTGCCCACCGCAGAATGGCACGCAACCGTCTCTTCACTTGAATGGATATGATCACATTCCTGACATCTTGCAAGATCGTGCTAATGGTTTGCACTGTGCCAGGCCTCAGCAGCTGGATTCGACTAACCACATCTATCCTTTCTTACCGGATATGGGTAACCACGTAAACGCACCAGTTCCCAATCCCTATGCAAATACGGCGCATAACGAGGACATCAGTGATGTTCTTGTACAATTAGGTATGAATGGCATTAACACAACATTGCAAAATGGGACTGATGGTCTTCCTCCTTATCTGCGGCAAGAAGGAACCGTTGTCCATTCTTTGCAGCAGCGATTCAGTCATAGTCCAAATGGATTCTATCACCCTCAAAAAGAAGGCAATTTTCATACAGTGCCTCAGCCTCCAACCCAAAATCACCATGCTTATAACATTATGGGACATGCCAGTGCCACAGATCTACCAGGTCAAAACACAAACCTGTGGTTTGGATCATCAAATACTCCTCAGTCGAATCCCAGCGCACAACTTCCTCAGGTCGATGAAGTGTTAAGCGTTGATGACTTAACTCCAAGCTTGTTTGTGGATCCTATGGTCCCGTATGGGAATACAGAAAACTTCCACAACACTGGTCATTTCTCGGAATCTATGCATCCCTCTAACGTCAACGCATATCCACCTAGTGACATGCATATGAATCAGCCTGTGGGACAGAACTTTCAAACTCCACAAAACATGCAACAGAAGCGAGTCAATAATGCTGGCAATAAAAGTCTTCAACCAGGCAGTAACAACAGCATTCTAAAGAGGATGCTGACCCTATGA

Transcript

ANN18467-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P35869	Aryl hydrocarbon receptor OS=Homo sapiens OX=9606 GN=AHR PE=1 SV=2
Q95LD9	Aryl hydrocarbon receptor OS=Delphinapterus leucas OX=9749 GN=AHR PE=2 SV=1
O02747	Aryl hydrocarbon receptor OS=Oryctolagus cuniculus OX=9986 GN=AHR PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009664 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan
PF08447 all species →	PAS_3	PAS fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000014 all species →	Domain	PAS domain	Interproscan
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR035965 all species →	Homologous_superfamily	PAS domain superfamily	Interproscan
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR013655 all species →	Domain	PAS fold-3	Interproscan
IPR050933 all species →	Family	Circadian Clock Transcription Factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23042 all species →	CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0034751 all species →	Cellular Component	aryl hydrocarbon receptor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN18467-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.