Gene detail

Detailed information of ANN18470-RA in Leptoseris scabra

Genomic Location: Scaffold_9__1_contigs__length_46255593:16679338...16691231
NR annotation: CAH3162791.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN18470-RA

ATGAGTCTTTTATCGGCCTTAAAAGGCAGAAAAAATTATCTGTGTGCGGGATATGGATTTTTACATAGACATAAAAGGTCGTTAAGGTATCAACTCCGCTGGCATTGGCTTGGCAGGCATGGTGGTAAAGGCAAACTCGTGTCCACGAGGTCGTATCTACAGATCATTGGAACCTCTACCGAATACAGCTCACCCAGCCTGTTTCTCTTCACTGACCATTACAGGTATTTATTTAACTGTGGAGAAAACACTGTAAGGATTCTTCATGAACTCAAGCGACTGAAAATGAACATCACTAGAGTCTTCTTGACGGGAATGACCTGGCAAAATCACATAGCAGGCCTTCCCACCTTAATCAAATGTCACGGCTCATCAACAGGAAAAGGACTGTCTATTTATGGTCCTGAGGGCATCACAAAGTTTCTTAAAGATGTTTCCACATTTTCTAGTACTGGCCTGCAAAGACTTGAATCTCTGAAGCTCTTTAACAGCACAGAGTTTATCAGTAATTCAGCTCAGGGCCAGCTTGAACCCTATGTTGATGACAATGTCACCATCTTGCCTGTTGTGTTTCAAAGGAAGGATCAAGATGTGTGTCATTCTGACGGGTGCTCCATTTGCTATATTTGTGAATTTGCTGATCTGCCAGGTCATTTTCTCCCTGAGAAAGCCATGAAGCTGGGCATAACACAGGAATGGTTTAGCGAATTAGCCTCTGGAAATCCAGTGGTTTCAAGTCTTGGAAGAAAGGTTCAACCTTCTGAAGTTGTGTCGCCTAGCATCCCAGGACATGTTTTCATGATTGTGGATTGTCCATCAGCAGAAATTAGAGATGAACTGGTCCACAGTGCTAAGTTTTCTCAGTTTCACAGCAAACAAGGCTCAAAGACGCTGCATGTGATTGTTCACATCACTCCACTGGAAATATTTGAGTCTGCATCTTACAAGGCATGGAAGGATCAGTTTGGGAAGAATACCACGCACATTCTAGTTAATAAACAAGTTGTGAAACAAGGGACTCCATTCTTAAGAAGTGTCACATTTCAGACTGCACTTTCTGTTGTTGACAAGGACATTTTCCCTCCCATAATTGAAAATCCTTCACTAATGGAGAATCACAACGCTCCAGAAAATTGCACTGTGGCAGAGAATTTATTGACGTACCAATTTCGCCCACTTATAAGGGAGGGATTAACTCGAAGGAACTTGCGTGTGGGGTATGAATTTAGTGACATGATGAAAAGGTTACAGAAGGCGTCAGAAAAATTGGATGACAAAACTTTAAAATTTGTTGGGACTTCAAGCGTTACCTCAAAAGAAGAAAGCTTGCAATCTATGTCTGACAGCAAGGTGACATTTCTTGGAACAGGCTTTGCCTTACCATCCTACTGCCGTGGTCAAAGCGCAGTTCTCATTCACACAGGAGAAGACAGATCCATTCTTTTGGACTGTGGAGAAGGGACATTCTCCCAACTTCATTGTTTGTACAAGGAACGCACAGCAGATGTATTGGCTTCTCTTAAGTGTGTGTTCATATCACACCGACATCCTGATCACCACATGGGATTAATGAGGCTTCTTCTGGAATATGAAAGATTATCTGAGGAGAGAGAGCTTCCGTTACTTACAATAGTGGGTCCATGGAGATTGTTTCAATGGCTAAAAGAACATTTCAAGCTCATGGGGAAAACCATGCCCATCAAATTTCTTCCATTTGGAGAAGTGAAGAATAATAAAGTGGAGAACCAAATACAGGAAGTTCTTGATGCGCTGGATCTAAGCAATCTTCAAGCTGTTTCTGTGCTTCACACCAGAGACAGCCATGGAATCATATTGAATCATAAGTCAGGCTGGAAGCTGGTGTACTCCGGAGATTGTGTGCCCTCTCATAATCTCATTAAAGAAGGTGAAAATGCGACGCTTTTGATTCATGAAGCAACTTACTTTGAGATTCCAAAAGATGAGCCAATCAGAGGCAGACATTGCACCCTGGCCGAGGCGATCAAAGTAAGCCGTGATATGAAGGCTAACTACACCATCCTCACGCACTTCTCAAAGCACTGGAAGAGTTACTGGCCTCACGAGTGCGGCAATCTTAGACTGGGACCAGGAATTAGCACAGCTTTTGACTTCATGACGGTTCGGTTTAGTGACCTTCCCAGACTGCATAAGCTCAGACCGGCCATTGCTAAAGTCTTCGAGCAAACTGCTGACGAAAAACGGCCACCGAGAATACCGACTCCTAGAGAACGAAGAATACAAAGACGACAAATGAAGCAGGAACTATTTAACTTCTTACCTTGA

Transcript

ANN18470-RA

Protein

Uniprot

Uniprot term	Description
Q8CGS5	Zinc phosphodiesterase ELAC protein 2 OS=Rattus norvegicus OX=10116 GN=Elac2 PE=1 SV=1
Q80Y81	Zinc phosphodiesterase ELAC protein 2 OS=Mus musculus OX=10090 GN=Elac2 PE=1 SV=1
Q10155	Ribonuclease Z 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=trz1 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13691	Lactamase_B_4	tRNase Z endonuclease	Domain	Interproscan
PF12706	Lactamase_B_2	Beta-lactamase superfamily domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027794	Domain	tRNase Z endonuclease	Interproscan
IPR036866	Homologous_superfamily	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Interproscan
IPR047151	Family	Zinc phosphodiesterase ELAC protein 2-like	Interproscan
IPR001279	Domain	Metallo-beta-lactamase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12553	ZINC PHOSPHODIESTERASE ELAC PROTEIN 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008033	Biological Process	tRNA processing	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0042781	Molecular Function	3'-tRNA processing endoribonuclease activity	Interproscan
GO:0072684	Biological Process	obsolete mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00784	rnz; ribonuclease Z	EC:3.1.26.11	Transfer RNA biogenesis	ko03016	deepkoala